{ "type": "genome", "identifier": "GCF_014203505.1", "organism": "Streptomyces eurocidicus", "title": "Streptomyces eurocidicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203505.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025048", "wgs_master": "JACHJF000000000.1", "refseq_category": "na", "taxid": "66423", "species_taxid": "66423", "organism_name": "Streptomyces eurocidicus", "infraspecific_name": "strain=CECT 3259", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420350v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/505/GCF_014203505.1_ASM1420350v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7892139", "genome_size_ungapped": "7890190", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203505.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "6715", "protein_coding_gene_count": "6524", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces eurocidicus" ], "sample_taxid": [ "66423" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7892139", "Number of Sequences": "68", "Longest Sequences (bp)": "840314", "N50 (bp)": "276005", "Gap Ratio (%)": "0.024695", "GCcontent (%)": "72.7", "Number of CDSs": "6770", "Average Protein Length": "338.7", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "87", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces eurocidicus", "strain": "strain=CECT 3259", "accession": "GCA_014203505.1", "taxid": 66423, "species_taxid": 66423, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2594, "total_fragments": 2597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces eurocidicus", "strain": "strain=ATCC 27428", "accession": "GCA_002891295.1", "taxid": 66423, "species_taxid": 66423, "relation_to_type": "type", "validated": true, "ani": 99.989, "matched_fragments": 2589, "total_fragments": 2597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces eurocidicus", "strain": "strain=NRRL ISP-5604", "accession": "GCA_015475845.1", "taxid": 66423, "species_taxid": 66423, "relation_to_type": "type", "validated": true, "ani": 99.9764, "matched_fragments": 2564, "total_fragments": 2597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 93.136, "matched_fragments": 2195, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B-1670", "accession": "GCA_002286695.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 93.034, "matched_fragments": 1910, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 81.1904, "matched_fragments": 1420, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 80.9807, "matched_fragments": 1137, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 80.7718, "matched_fragments": 1269, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 80.4914, "matched_fragments": 1260, "total_fragments": 2597, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002891295.1", "gtdb_species": "s__Streptomyces eurocidicus", "ani": 99.989, "matched_fragments": 2589, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002192455.1", "gtdb_species": "s__Streptomyces albireticuli_B", "ani": 93.4704, "matched_fragments": 2194, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002286695.1", "gtdb_species": "s__Streptomyces albireticuli", "ani": 93.0385, "matched_fragments": 1910, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018614525.1", "gtdb_species": "s__Streptomyces sp018614525", "ani": 87.4929, "matched_fragments": 1583, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003391135.1", "gtdb_species": "s__Streptomyces olivoreticuli", "ani": 86.6068, "matched_fragments": 1776, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001445655.1", "gtdb_species": "s__Streptomyces roseifaciens", "ani": 85.9503, "matched_fragments": 1756, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014203545.1", "gtdb_species": "s__Streptomyces netropsis", "ani": 85.6551, "matched_fragments": 1651, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017876625.1", "gtdb_species": "s__Streptomyces syringium", "ani": 85.458, "matched_fragments": 1666, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017916255.1", "gtdb_species": "s__Streptomyces mobaraensis", "ani": 83.4133, "matched_fragments": 1501, "total_fragments": 2597, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "eurocidicus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }