{ "type": "genome", "identifier": "GCF_014203695.1", "organism": "Nocardiopsis algeriensis", "title": "Nocardiopsis algeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203695.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025532", "wgs_master": "JACHJO000000000.1", "refseq_category": "reference genome", "taxid": "1478215", "species_taxid": "1478215", "organism_name": "Nocardiopsis algeriensis", "infraspecific_name": "strain=CECT 8712", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420369v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/695/GCF_014203695.1_ASM1420369v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4812129", "genome_size_ungapped": "4811278", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203695.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4246", "protein_coding_gene_count": "4141", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis algeriensis" ], "sample_taxid": [ "1478215" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4812129", "Number of Sequences": "26", "Longest Sequences (bp)": "526356", "N50 (bp)": "414545", "Gap Ratio (%)": "0.017684", "GCcontent (%)": "71.3", "Number of CDSs": "4265", "Average Protein Length": "325.2", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis algeriensis", "strain": "strain=CECT 8712", "accession": "GCA_014203695.1", "taxid": 1478215, "species_taxid": 1478215, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1591, "total_fragments": 1592, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.3031, "matched_fragments": 1125, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.2892, "matched_fragments": 1179, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.2744, "matched_fragments": 1180, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 84.2568, "matched_fragments": 1179, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.2325, "matched_fragments": 1021, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 84.2116, "matched_fragments": 1175, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis quinghaiensis", "strain": "strain=YIM 28A4", "accession": "GCA_008638365.1", "taxid": 464995, "species_taxid": 464995, "relation_to_type": "type", "validated": true, "ani": 84.1882, "matched_fragments": 1129, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 84.1559, "matched_fragments": 1180, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis flavescens", "strain": "strain=CGMCC 4.5723", "accession": "GCA_900141985.1", "taxid": 758803, "species_taxid": 758803, "relation_to_type": "type", "validated": true, "ani": 84.0604, "matched_fragments": 1163, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 84.0586, "matched_fragments": 1185, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": true, "ani": 83.758, "matched_fragments": 1075, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 82.7955, "matched_fragments": 1077, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis coralli", "strain": "strain=HNM0947", "accession": "GCA_014892575.1", "taxid": 2772213, "species_taxid": 2772213, "relation_to_type": "type", "validated": true, "ani": 81.8696, "matched_fragments": 976, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.3276, "matched_fragments": 893, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.8675, "matched_fragments": 724, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 79.5347, "matched_fragments": 715, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014203695.1", "gtdb_species": "s__Nocardiopsis algeriensis", "ani": 100.0, "matched_fragments": 1591, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002529455.1", "gtdb_species": "s__Nocardiopsis fusca", "ani": 84.4456, "matched_fragments": 1166, "total_fragments": 1592, "gtdb_taxonomy": 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