{ "type": "genome", "identifier": "GCF_014203755.1", "organism": "Saccharothrix violaceirubra", "title": "Saccharothrix violaceirubra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203755.1", "bioproject": "PRJNA224116", "biosample": "SAMN12793293", "wgs_master": "JACHJS000000000.1", "refseq_category": "reference genome", "taxid": "413306", "species_taxid": "413306", "organism_name": "Saccharothrix violaceirubra", "infraspecific_name": "strain=DSM 45084", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420375v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/755/GCF_014203755.1_ASM1420375v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7354386", "genome_size_ungapped": "7354386", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203755.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "6881", "protein_coding_gene_count": "6725", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharothrix violaceirubra" ], "sample_taxid": [ "413306" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 82.3129, "matched_fragments": 1381, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix tamanrassetensis", "strain": "strain=CECT 8640", "accession": "GCA_014203665.1", "taxid": 1051531, "species_taxid": 1051531, "relation_to_type": "type", "validated": true, "ani": 82.2681, "matched_fragments": 1374, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix deserti", "strain": "strain=BMP B8144", "accession": "GCA_009769385.1", "taxid": 2593674, "species_taxid": 2593674, "relation_to_type": "type", "validated": true, "ani": 82.1916, "matched_fragments": 1383, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix variisporea", "strain": "strain=DSM 43911", "accession": "GCA_003634995.1", "taxid": 543527, "species_taxid": 543527, "relation_to_type": "type", "validated": true, "ani": 82.1588, "matched_fragments": 1402, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 82.1563, "matched_fragments": 1433, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 82.1301, "matched_fragments": 1400, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 78.1907, "matched_fragments": 786, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 77.8806, "matched_fragments": 976, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014203755.1", "gtdb_species": "s__Actinosynnema violaceirubrum", "ani": 100.0, "matched_fragments": 2449, "total_fragments": 2451, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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