{ "type": "genome", "identifier": "GCF_014203855.1", "organism": "Kitasatospora kifunensis", "title": "Kitasatospora kifunensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203855.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025023", "wgs_master": "JACHJV000000000.1", "refseq_category": "reference genome", "taxid": "58351", "species_taxid": "58351", "organism_name": "Kitasatospora kifunensis", "infraspecific_name": "strain=DSM 41654", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420385v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/855/GCF_014203855.1_ASM1420385v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9567486", "genome_size_ungapped": "9567486", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203855.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "8204", "protein_coding_gene_count": "7953", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora kifunensis" ], "sample_taxid": [ "58351" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9567486", "Number of Sequences": "4", "Longest Sequences (bp)": "7732878", "N50 (bp)": "7732878", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "8317", "Average Protein Length": "337.0", "Coding Ratio (%)": "87.9", "Number of rRNAs": "27", "Number of tRNAs": "94", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3184, "total_fragments": 3187, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora azatica", "strain": "strain=KCTC 9699", "accession": "GCA_000744785.1", "taxid": 58347, "species_taxid": 58347, "relation_to_type": "type", "validated": true, "ani": 86.0242, "matched_fragments": 1668, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 84.9851, "matched_fragments": 1833, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 84.7432, "matched_fragments": 1678, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora mediocidica", "strain": "strain=KCTC 9733", "accession": "GCA_000744225.1", "taxid": 58352, "species_taxid": 58352, "relation_to_type": "type", "validated": true, "ani": 84.6405, "matched_fragments": 1736, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 84.5141, "matched_fragments": 1569, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora indigofera", "strain": "strain=JCM 4646", "accession": "GCA_014655955.1", "taxid": 67307, "species_taxid": 67307, "relation_to_type": "type", "validated": true, "ani": 82.6955, "matched_fragments": 1517, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora herbaricolor", "strain": "strain=JCM 4138", "accession": "GCA_014648975.1", "taxid": 68217, "species_taxid": 68217, "relation_to_type": "type", "validated": true, "ani": 82.5662, "matched_fragments": 1529, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 82.4202, "matched_fragments": 1481, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 82.1924, "matched_fragments": 1539, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 81.8809, "matched_fragments": 1355, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 81.836, "matched_fragments": 1446, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 81.8146, "matched_fragments": 1404, "total_fragments": 3187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora phosalacinea", "strain": "strain=NRRL B-16230", "accession": "GCA_000716545.1", 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"s__Kitasatospora kifunensis", "ani": 100.0, "matched_fragments": 3185, "total_fragments": 3187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000744785.1", "gtdb_species": "s__Kitasatospora azatica", "ani": 86.1274, "matched_fragments": 1656, "total_fragments": 3187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003205575.1", "gtdb_species": "s__Kitasatospora 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