{ "type": "genome", "identifier": "GCF_014204745.1", "organism": "Streptomyces collinus", "title": "Streptomyces collinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014204745.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908378", "wgs_master": "JACHLX000000000.1", "refseq_category": "na", "taxid": "42684", "species_taxid": "42684", "organism_name": "Streptomyces collinus", "infraspecific_name": "strain=DSM 40129", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420474v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014204745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/204/745/GCF_014204745.1_ASM1420474v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8858480", "genome_size_ungapped": "8858480", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014204745.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "8004", "protein_coding_gene_count": "7734", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces collinus" ], "sample_taxid": [ "42684" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.375 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8858480", "Number of Sequences": "2", "Longest Sequences (bp)": "8218552", "N50 (bp)": "8218552", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "8078", "Average Protein Length": "324.7", "Coding Ratio (%)": "88.8", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces violaceochromogenes", "strain": "strain=JCM 4530", "accession": "GCA_014650235.1", "taxid": 67377, "species_taxid": 67377, "relation_to_type": "type", "validated": true, "ani": 99.3561, "matched_fragments": 2770, "total_fragments": 2952, 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{ "organism_name": "Streptomyces massasporeus", "strain": "strain=JCM 4139", "accession": "GCA_014648995.1", "taxid": 67324, "species_taxid": 67324, "relation_to_type": "type", "validated": true, "ani": 93.159, "matched_fragments": 2405, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavovariabilis", "strain": "strain=NRRL B-16367", "accession": "GCA_000725785.1", "taxid": 284031, "species_taxid": 284031, "relation_to_type": "type", "validated": true, "ani": 93.0236, "matched_fragments": 2351, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tuirus", "strain": "strain=JCM 4255", "accession": "GCA_014701095.1", "taxid": 68278, "species_taxid": 68278, "relation_to_type": "type", "validated": true, "ani": 92.9232, "matched_fragments": 2145, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces luteogriseus", "strain": "strain=DSM 40483", "accession": "GCA_014205055.1", "taxid": 68233, "species_taxid": 68233, "relation_to_type": "type", "validated": true, "ani": 92.8611, "matched_fragments": 2358, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tibetensis", "strain": "strain=XZ 46", "accession": "GCA_005869865.1", "taxid": 2382123, "species_taxid": 2382123, "relation_to_type": "type", "validated": true, "ani": 92.4166, "matched_fragments": 2358, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tibetensis", "strain": "strain=XZ 46", "accession": "GCA_007655005.1", "taxid": 2382123, "species_taxid": 2382123, "relation_to_type": "type", "validated": true, "ani": 92.407, "matched_fragments": 2358, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces indiaensis", "strain": "strain=DSM 43803", "accession": "GCA_021474405.1", "taxid": 284033, "species_taxid": 284033, "relation_to_type": "type", "validated": true, "ani": 91.8802, "matched_fragments": 2039, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 90.9573, "matched_fragments": 2231, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=DSM 40310", "accession": "GCA_021390235.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 90.7837, "matched_fragments": 2288, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces resistomycificus", "strain": "strain=DSM 40133", "accession": "GCA_001514265.1", "taxid": 67356, 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