{ "type": "genome", "identifier": "GCF_014204755.1", "organism": "Brachybacterium aquaticum", "title": "Brachybacterium aquaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014204755.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908467", "wgs_master": "JACHLZ000000000.1", "refseq_category": "reference genome", "taxid": "1432564", "species_taxid": "1432564", "organism_name": "Brachybacterium aquaticum", "infraspecific_name": "strain=DSM 28796", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420475v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014204755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/204/755/GCF_014204755.1_ASM1420475v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3449336", "genome_size_ungapped": "3449336", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014204755.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "3139", "protein_coding_gene_count": "3000", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachybacterium aquaticum" ], "sample_taxid": [ "1432564" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3449336", "Number of Sequences": "1", "Longest Sequences (bp)": "3449336", "N50 (bp)": "3449336", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "3119", "Average Protein Length": "331.6", "Coding Ratio (%)": "89.9", "Number of rRNAs": "9", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachybacterium aquaticum", "strain": "strain=DSM 28796", "accession": "GCA_014204755.1", "taxid": 1432564, "species_taxid": 1432564, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1149, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brachybacterium saurashtrense", "strain": "strain=DSM 23186", "accession": "GCA_003355475.1", "taxid": 556288, "species_taxid": 556288, "relation_to_type": "type", "validated": true, "ani": 84.7657, "matched_fragments": 821, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium saurashtrense", "strain": "strain=DSM 23186", "accession": "GCA_003994295.1", "taxid": 556288, "species_taxid": 556288, "relation_to_type": "type", "validated": true, "ani": 84.7021, "matched_fragments": 814, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium massiliense", "strain": "strain=mt5", "accession": "GCA_900184245.1", "taxid": 1755098, "species_taxid": 1755098, "relation_to_type": "type", "validated": true, "ani": 84.5707, "matched_fragments": 804, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium faecium", "strain": "strain=DSM 4810", "accession": "GCA_000023405.1", "taxid": 43669, "species_taxid": 43669, "relation_to_type": "type", "validated": true, "ani": 84.5418, "matched_fragments": 792, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium ginsengisoli", "strain": "strain=DCY80", "accession": "GCA_002407065.1", "taxid": 1331682, "species_taxid": 1331682, "relation_to_type": "type", "validated": true, "ani": 84.1162, "matched_fragments": 818, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium vulturis", "strain": "strain=VM2412", "accession": "GCA_002407185.1", "taxid": 2017484, "species_taxid": 2017484, "relation_to_type": "type", "validated": true, "ani": 83.7756, "matched_fragments": 763, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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kimchii", "strain": "strain=CBA3104", "accession": "GCA_023373525.1", "taxid": 2942909, "species_taxid": 2942909, "relation_to_type": "type", "validated": true, "ani": 81.4026, "matched_fragments": 616, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 77.4982, "matched_fragments": 344, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 76.8114, "matched_fragments": 250, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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"num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003711805.1", "gtdb_species": "s__Brachybacterium intestinipullorum", "ani": 85.6423, "matched_fragments": 859, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermabacteraceae;g__Brachybacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003355475.1", "gtdb_species": "s__Brachybacterium saurashtrense", "ani": 84.7787, "matched_fragments": 819, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermabacteraceae;g__Brachybacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", 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