{ "type": "genome", "identifier": "GCF_014204795.1", "organism": "Nonomuraea jabiensis", "title": "Nonomuraea jabiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014204795.1", "bioproject": "PRJNA224116", "biosample": "SAMN14510186", "wgs_master": "JACHMB000000000.1", "refseq_category": "reference genome", "taxid": "882448", "species_taxid": "882448", "organism_name": "Nonomuraea jabiensis", "infraspecific_name": "strain=DSM 45507", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420479v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014204795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/204/795/GCF_014204795.1_ASM1420479v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "13173116", "genome_size_ungapped": "13173116", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014204795.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "12141", "protein_coding_gene_count": "11882", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea jabiensis" ], "sample_taxid": [ "882448" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "3.536 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.3, "strain_heterogeneity": 44.44, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "13173116", "Number of Sequences": "1", "Longest Sequences (bp)": "13173116", "N50 (bp)": "13173116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "12320", "Average Protein Length": "320.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "15", "Number of tRNAs": "97", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 4391, "total_fragments": 4391, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 94.9032, "matched_fragments": 3571, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 87.5825, "matched_fragments": 2541, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 87.4558, "matched_fragments": 2533, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 86.4103, "matched_fragments": 2590, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea zeae", "strain": "strain=DSM 100528", "accession": "GCA_005889725.1", "taxid": 1642303, "species_taxid": 1642303, "relation_to_type": "type", "validated": true, "ani": 86.3722, "matched_fragments": 2591, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea turkmeniaca", "strain": "strain=DSM 43926", "accession": "GCA_005889735.1", "taxid": 103838, "species_taxid": 103838, "relation_to_type": "type", "validated": true, "ani": 86.1493, "matched_fragments": 2340, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea polychroma", "strain": "strain=DSM 43925", "accession": "GCA_004011505.1", "taxid": 46176, "species_taxid": 46176, "relation_to_type": "type", "validated": true, "ani": 86.0045, "matched_fragments": 2605, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea solani", "strain": "strain=CGMCC 4.7037", "accession": "GCA_900108335.1", "taxid": 1144553, "species_taxid": 1144553, "relation_to_type": "type", "validated": true, "ani": 85.9805, "matched_fragments": 2809, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 85.8855, "matched_fragments": 2719, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea cypriaca", "strain": "strain=K274", "accession": "GCA_015645445.1", "taxid": 1187855, 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83.3875, "matched_fragments": 2176, "total_fragments": 4391, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 10.3, "strain_heterogeneity": 44.44 }, "gtdb_result": [ { "accession": "GCF_014204795.1", "gtdb_species": "s__Nonomuraea jabiensis", "ani": 100.0, "matched_fragments": 4390, "total_fragments": 4391, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014873145.1", "gtdb_species": "s__Nonomuraea angiospora", "ani": 94.886, "matched_fragments": 3575, "total_fragments": 4391, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", 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