{ "type": "genome", "identifier": "GCF_014204865.1", "organism": "Amycolatopsis jiangsuensis", "title": "Amycolatopsis jiangsuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014204865.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878110", "wgs_master": "JACHMG000000000.1", "refseq_category": "reference genome", "taxid": "1181879", "species_taxid": "1181879", "organism_name": "Amycolatopsis jiangsuensis", "infraspecific_name": "strain=DSM 45859", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420486v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014204865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/204/865/GCF_014204865.1_ASM1420486v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8047834", "genome_size_ungapped": "8047834", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014204865.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "7295", "protein_coding_gene_count": "7107", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis jiangsuensis" ], "sample_taxid": [ "1181879" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.156 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8047834", "Number of Sequences": "2", "Longest Sequences (bp)": "8045121", "N50 (bp)": "8045121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "7372", "Average Protein Length": "326.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "12", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis jiangsuensis", "strain": "strain=DSM 45859", "accession": "GCA_014204865.1", "taxid": 1181879, "species_taxid": 1181879, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2679, "total_fragments": 2681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis sulphurea", "strain": "strain=DSM 46092", "accession": "GCA_002564045.1", "taxid": 76022, "species_taxid": 76022, "relation_to_type": "type", "validated": true, "ani": 86.0682, "matched_fragments": 1498, "total_fragments": 2681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis panacis", "strain": "strain=YIM PH21725", "accession": "GCA_003600245.1", "taxid": 2340917, "species_taxid": 2340917, "relation_to_type": "type", "validated": true, "ani": 85.9614, "matched_fragments": 1463, "total_fragments": 2681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis nivea", "strain": "strain=CFH S0261", "accession": "GCA_004522235.1", "taxid": 1644109, "species_taxid": 1644109, "relation_to_type": "type", "validated": true, "ani": 83.5985, "matched_fragments": 1663, "total_fragments": 2681, "ani_threshold": 95, "status": 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"accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 79.805, "matched_fragments": 1135, "total_fragments": 2681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": "type", "validated": true, "ani": 78.5924, "matched_fragments": 777, "total_fragments": 2681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea tibetensis", "strain": "strain=FXJ1.1311", "accession": "GCA_007845675.1", "taxid": 2591470, "species_taxid": 2591470, "relation_to_type": "type", "validated": true, "ani": 77.7478, "matched_fragments": 808, "total_fragments": 2681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea californiensis", "strain": "strain=DSM 43393", "accession": "GCA_024648825.1", "taxid": 438851, 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