{ "type": "genome", "identifier": "GCF_014205135.1", "organism": "Kribbella italica", "title": "Kribbella italica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014205135.1", "bioproject": "PRJNA224116", "biosample": "SAMN14503048", "wgs_master": "JACHMY000000000.1", "refseq_category": "reference genome", "taxid": "1540520", "species_taxid": "1540520", "organism_name": "Kribbella italica", "infraspecific_name": "strain=DSM 28967", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420513v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014205135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/205/135/GCF_014205135.1_ASM1420513v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8885108", "genome_size_ungapped": "8885108", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014205135.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "8371", "protein_coding_gene_count": "8262", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella italica" ], "sample_taxid": [ "1540520" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8885108", "Number of Sequences": "1", "Longest Sequences (bp)": "8885108", "N50 (bp)": "8885108", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "8426", "Average Protein Length": "321.4", "Coding Ratio (%)": "91.4", "Number of rRNAs": "9", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2961, "total_fragments": 2961, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 85.9712, "matched_fragments": 1888, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 84.1539, "matched_fragments": 1854, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 83.61, "matched_fragments": 1530, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 83.4749, "matched_fragments": 1759, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella monticola", "strain": "strain=NEAU-SW521", "accession": "GCA_003261635.1", "taxid": 2185285, "species_taxid": 2185285, "relation_to_type": "type", "validated": true, "ani": 83.277, "matched_fragments": 1677, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 83.067, "matched_fragments": 1705, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 82.8372, "matched_fragments": 1640, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 82.7922, "matched_fragments": 1740, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=ATCC 39419", "accession": "GCA_013131805.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 82.7793, "matched_fragments": 1668, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 82.6788, "matched_fragments": 1601, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.614, "matched_fragments": 1696, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 82.2905, "matched_fragments": 1499, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 82.2096, "matched_fragments": 1552, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.9545, "matched_fragments": 608, "total_fragments": 2961, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014205135.1", "gtdb_species": "s__Kribbella italica", "ani": 100.0, "matched_fragments": 2961, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001984195.1", "gtdb_species": "s__Kribbella sp001984195", "ani": 88.2699, "matched_fragments": 2103, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024345.1", "gtdb_species": "s__Kribbella flavida", "ani": 85.9739, "matched_fragments": 1887, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007828865.1", "gtdb_species": "s__Kribbella amoyensis", "ani": 84.1195, "matched_fragments": 1859, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004361855.1", "gtdb_species": "s__Kribbella sp004361855", "ani": 83.7052, "matched_fragments": 1719, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345365.1", "gtdb_species": "s__Kribbella sp004345365", "ani": 83.444, "matched_fragments": 1780, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003261635.1", "gtdb_species": "s__Kribbella monticola", "ani": 83.2983, "matched_fragments": 1673, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365175.1", "gtdb_species": "s__Kribbella sp004365175", "ani": 83.295, "matched_fragments": 1719, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004342025.1", "gtdb_species": "s__Kribbella sp004342025", "ani": 83.1429, "matched_fragments": 1747, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011761605.1", "gtdb_species": "s__Kribbella shirazensis", "ani": 82.845, "matched_fragments": 1639, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876295.1", "gtdb_species": "s__Kribbella aluminosa", "ani": 82.6737, "matched_fragments": 1603, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005233875.1", "gtdb_species": "s__Kribbella sp005233875", "ani": 82.6358, "matched_fragments": 1692, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348455.1", "gtdb_species": "s__Kribbella albertanoniae", "ani": 82.5725, "matched_fragments": 1577, "total_fragments": 2961, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 29.25, "optimum_ph": 7.093, "genome_size": 8603649.2, 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