{ "type": "genome", "identifier": "GCF_014205215.1", "organism": "Actinoplanes lobatus", "title": "Actinoplanes lobatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014205215.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878390", "wgs_master": "JACHNC000000000.1", "refseq_category": "reference genome", "taxid": "113568", "species_taxid": "113568", "organism_name": "Actinoplanes lobatus", "infraspecific_name": "strain=DSM 43150", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420521v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014205215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/205/215/GCF_014205215.1_ASM1420521v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10405733", "genome_size_ungapped": "10405733", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014205215.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "9519", "protein_coding_gene_count": "9308", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes lobatus" ], "sample_taxid": [ "113568" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.781 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10405733", "Number of Sequences": "2", "Longest Sequences (bp)": "10370198", "N50 (bp)": "10370198", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "9537", "Average Protein Length": "328.1", "Coding Ratio (%)": "90.2", "Number of rRNAs": "18", "Number of tRNAs": "104", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes lobatus", "strain": "strain=DSM 43150", "accession": "GCA_014205215.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3465, "total_fragments": 3467, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=JCM 3061", "accession": "GCA_014647815.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 99.9752, "matched_fragments": 3373, "total_fragments": 3467, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 99.9529, "matched_fragments": 3284, "total_fragments": 3467, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 94.9915, "matched_fragments": 2665, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 94.9752, "matched_fragments": 2768, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 94.9677, "matched_fragments": 2776, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes hulinensis", "strain": "strain=NEAU-M9", "accession": "GCA_019429605.1", "taxid": 1144547, "species_taxid": 1144547, "relation_to_type": "type", "validated": true, "ani": 94.9667, "matched_fragments": 2729, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 93.6789, "matched_fragments": 2660, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.142, "matched_fragments": 948, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 79.1136, "matched_fragments": 861, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 77.5447, "matched_fragments": 1418, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1834, "matched_fragments": 1280, "total_fragments": 3467, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014205215.1", "gtdb_species": "s__Actinoplanes lobatus", "ani": 100.0, "matched_fragments": 3465, "total_fragments": 3467, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0428, "mean_intra_species_ani": 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