{ "type": "genome", "identifier": "GCF_014205255.1", "organism": "Streptomyces caelestis", "title": "Streptomyces caelestis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014205255.1", "bioproject": "PRJNA224116", "biosample": "SAMN14502444", "wgs_master": "JACHNE000000000.1", "refseq_category": "reference genome", "taxid": "36816", "species_taxid": "36816", "organism_name": "Streptomyces caelestis", "infraspecific_name": "strain=DSM 40084", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420525v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014205255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/205/255/GCF_014205255.1_ASM1420525v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8936092", "genome_size_ungapped": "8936092", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014205255.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "8259", "protein_coding_gene_count": "7766", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces caelestis" ], "sample_taxid": [ "36816" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.402 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8936092", "Number of Sequences": "1", "Longest Sequences (bp)": "8936092", "N50 (bp)": "8936092", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "8284", "Average Protein Length": "317.8", "Coding Ratio (%)": "88.4", "Number of rRNAs": "18", "Number of tRNAs": "84", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces caelestis", "strain": "strain=DSM 40084", "accession": "GCA_014205255.1", "taxid": 36816, "species_taxid": 36816, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2972, "total_fragments": 2978, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces caelestis", "strain": "strain=JCM 4566", "accession": "GCA_014650295.1", "taxid": 36816, "species_taxid": 36816, "relation_to_type": "type", "validated": true, "ani": 99.9852, "matched_fragments": 2919, "total_fragments": 2978, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces azureus", "strain": "strain=ATCC 14921", "accession": "GCA_001270025.1", "taxid": 146537, "species_taxid": 146537, "relation_to_type": "type", "validated": true, "ani": 94.6247, "matched_fragments": 2259, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces swartbergensis", "strain": "strain=HMC13", "accession": "GCA_002148965.1", "taxid": 487165, "species_taxid": 487165, "relation_to_type": "type", "validated": true, "ani": 94.1347, "matched_fragments": 2050, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces coeruleorubidus", "strain": "strain=JCM 4359", "accession": "GCA_014649455.1", "taxid": 116188, "species_taxid": 116188, "relation_to_type": "suspected-type", "validated": true, "ani": 94.0023, "matched_fragments": 2305, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces coeruleorubidus", "strain": "strain=ATCC 13740", "accession": "GCA_008705135.1", "taxid": 116188, "species_taxid": 116188, "relation_to_type": "suspected-type", "validated": true, "ani": 93.9854, "matched_fragments": 2345, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces africanus", "strain": "strain=NRRL B-24243", "accession": "GCA_002150735.1", "taxid": 231024, "species_taxid": 231024, "relation_to_type": "type", "validated": true, "ani": 92.9265, "matched_fragments": 1973, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 91.5802, "matched_fragments": 2257, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=DSM 40310", "accession": "GCA_021390235.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 91.3038, "matched_fragments": 2227, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 90.246, "matched_fragments": 1846, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tibetensis", "strain": "strain=XZ 46", "accession": "GCA_007655005.1", "taxid": 2382123, "species_taxid": 2382123, "relation_to_type": "type", "validated": true, "ani": 89.8651, "matched_fragments": 2184, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces indiaensis", "strain": "strain=DSM 43803", "accession": "GCA_021474405.1", "taxid": 284033, "species_taxid": 284033, "relation_to_type": "type", "validated": true, "ani": 89.7981, "matched_fragments": 1871, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 85.4943, "matched_fragments": 1733, "total_fragments": 2978, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014205255.1", "gtdb_species": "s__Streptomyces caelestis", "ani": 100.0, "matched_fragments": 2974, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002148965.1", "gtdb_species": "s__Streptomyces swartbergensis", "ani": 94.165, "matched_fragments": 2046, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008705135.1", "gtdb_species": "s__Streptomyces coeruleorubidus", "ani": 94.0088, "matched_fragments": 2344, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_000415505.1", "gtdb_species": "s__Streptomyces afghaniensis", "ani": 93.4837, "matched_fragments": 2156, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900236475.1", "gtdb_species": "s__Streptomyces chartreusis_D", "ani": 93.4551, "matched_fragments": 2302, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002150735.1", "gtdb_species": "s__Streptomyces africanus", "ani": 92.9587, "matched_fragments": 1969, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001611795.1", "gtdb_species": "s__Streptomyces qaidamensis", "ani": 90.39, "matched_fragments": 2255, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3368, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007655005.1", "gtdb_species": "s__Streptomyces tibetensis", "ani": 89.8775, "matched_fragments": 2182, "total_fragments": 2978, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8622160.0, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "caelestis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }