{ "type": "genome", "identifier": "GCF_014205335.1", "organism": "Actinoplanes digitatis", "title": "Actinoplanes digitatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014205335.1", "bioproject": "PRJNA224116", "biosample": "SAMN05877860", "wgs_master": "JACHNH000000000.1", "refseq_category": "reference genome", "taxid": "1868", "species_taxid": "1868", "organism_name": "Actinoplanes digitatis", "infraspecific_name": "strain=DSM 43149", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420533v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014205335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/205/335/GCF_014205335.1_ASM1420533v1", "excluded_from_refseq": 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"missing" ], "sample_host_location_id": [], "data_size": "2.423 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9128557", "Number of Sequences": "1", "Longest Sequences (bp)": "9128557", "N50 (bp)": "9128557", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.9", "Number of CDSs": "8146", "Average Protein Length": "341.3", "Coding Ratio (%)": "91.4", "Number of rRNAs": "9", "Number of tRNAs": "100", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes digitatis", "strain": "strain=DSM 43149", "accession": "GCA_014205335.1", "taxid": 1868, "species_taxid": 1868, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3041, "total_fragments": 3042, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes digitatis", "strain": "strain=NBRC 12512", "accession": "GCA_016862155.1", "taxid": 1868, "species_taxid": 1868, "relation_to_type": "type", "validated": true, "ani": 99.9681, "matched_fragments": 2946, "total_fragments": 3042, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes friuliensis", "strain": "strain=DSM 7358", "accession": "GCA_000494755.1", "taxid": 196914, "species_taxid": 196914, "relation_to_type": "type", "validated": true, "ani": 85.1467, "matched_fragments": 1866, "total_fragments": 3042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 85.103, "matched_fragments": 1880, "total_fragments": 3042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes auranticolor", "strain": "strain=NBRC 12245", "accession": "GCA_018332655.1", "taxid": 47988, "species_taxid": 47988, "relation_to_type": "type", "validated": true, "ani": 84.9445, "matched_fragments": 1845, "total_fragments": 3042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Couchioplanes caeruleus", "strain": "strain=DSM 43634", "accession": "GCA_003751945.1", "taxid": 56438, "species_taxid": 56438, "relation_to_type": "type", "validated": true, "ani": 82.6761, "matched_fragments": 1568, "total_fragments": 3042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 80.6056, "matched_fragments": 1584, "total_fragments": 3042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", 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