{ "tc_result": [ { "organism_name": "Paenochrobactrum gallinarii", "strain": "strain=DSM 22336", "accession": "GCA_014205685.1", "taxid": 643673, "species_taxid": 643673, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1084, "total_fragments": 1089, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_907164595.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 79.0467, "matched_fragments": 353, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_018436245.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 79.0427, "matched_fragments": 355, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum saccharolyticum", "strain": "strain=CCUG 33852", "accession": "GCA_008801715.1", "taxid": 354352, "species_taxid": 354352, "relation_to_type": "type", "validated": true, "ani": 78.8813, "matched_fragments": 334, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum saccharolyticum", "strain": "strain=DSM 25620", "accession": "GCA_014203195.1", "taxid": 354352, "species_taxid": 354352, "relation_to_type": "type", "validated": true, "ani": 78.8216, "matched_fragments": 339, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella thiophenivorans", "strain": "strain=DSM 7216", "accession": "GCA_002252445.1", "taxid": 571255, "species_taxid": 571255, "relation_to_type": "type", "validated": true, "ani": 77.8603, "matched_fragments": 260, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella pseudogrignonensis", "strain": "strain=CCUG 30717", "accession": "GCA_002252525.1", "taxid": 419475, "species_taxid": 419475, "relation_to_type": "type", "validated": true, "ani": 77.7689, "matched_fragments": 269, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ochrobactrum] quorumnocens", "strain": "strain=A44", "accession": "GCA_002278035.1", "taxid": 271865, "species_taxid": 271865, "relation_to_type": "type", "validated": true, "ani": 77.7277, "matched_fragments": 246, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella pituitosa", "strain": "strain=CCUG 50899", "accession": "GCA_008801705.1", "taxid": 571256, "species_taxid": 571256, "relation_to_type": "type", "validated": true, "ani": 77.7024, "matched_fragments": 262, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella rhizosphaerae", "strain": "strain=PR17", "accession": "GCA_002252475.1", "taxid": 571254, "species_taxid": 571254, "relation_to_type": "type", "validated": true, "ani": 77.6774, "matched_fragments": 234, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella pituitosa", "strain": "strain=CCUG 50899", "accession": "GCA_003049685.2", "taxid": 571256, "species_taxid": 571256, "relation_to_type": "type", "validated": true, "ani": 77.6534, "matched_fragments": 257, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella gallinifaecis", "strain": "strain=ISO 196", "accession": "GCA_006476605.1", "taxid": 215590, "species_taxid": 215590, "relation_to_type": "type", "validated": true, "ani": 77.6091, "matched_fragments": 262, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014205685.1", "gtdb_species": "s__Paenochrobactrum gallinarii", "ani": 100.0, "matched_fragments": 1084, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Paenochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003314995.1", "gtdb_species": "s__Pseudochrobactrum asaccharolyticum", "ani": 78.9385, "matched_fragments": 373, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.18", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008801715.1", "gtdb_species": "s__Pseudochrobactrum saccharolyticum", "ani": 78.8868, "matched_fragments": 334, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.83", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_900470285.1", "gtdb_species": "s__Pseudochrobactrum sp900470285", "ani": 78.5173, "matched_fragments": 307, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002252505.1", "gtdb_species": 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thiophenivorans", "ani": 77.8603, "matched_fragments": 260, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002252525.1", "gtdb_species": "s__Ochrobactrum_A pseudogrignonensis", "ani": 77.7596, "matched_fragments": 269, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_002278035.1", "gtdb_species": "s__Ochrobactrum_A quorumnocens", "ani": 77.7212, "matched_fragments": 243, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002252475.1", "gtdb_species": "s__Ochrobactrum_A rhizosphaerae", "ani": 77.6774, "matched_fragments": 234, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003049685.1", "gtdb_species": "s__Ochrobactrum_A pituitosa", "ani": 77.6426, "matched_fragments": 257, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_006476605.1", "gtdb_species": "s__Ochrobactrum_A gallinifaecis", "ani": 77.6153, "matched_fragments": 260, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014138095.1", "gtdb_species": "s__Ochrobactrum_B sp014138095", "ani": 77.6041, "matched_fragments": 268, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900465685.1", "gtdb_species": "s__Ochrobactrum_B sp900465685", "ani": 77.5406, "matched_fragments": 256, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003149535.1", "gtdb_species": "s__Falsochrobactrum shanghaiense", "ani": 77.5203, "matched_fragments": 237, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Falsochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005938105.1", "gtdb_species": "s__Ochrobactrum_B haematophila", "ani": 77.4932, "matched_fragments": 267, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900473915.1", "gtdb_species": "s__Ochrobactrum sp900473915", "ani": 77.4809, "matched_fragments": 233, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003550135.1", "gtdb_species": "s__Ochrobactrum_B haematophila_B", "ani": 77.4321, "matched_fragments": 235, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002005325.1", "gtdb_species": "s__Tokpelaia hoelldoblerii", "ani": 76.6411, "matched_fragments": 86, "total_fragments": 1089, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Tokpelaia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }