{ "type": "genome", "identifier": "GCF_014207445.1", "organism": "Streptomyces candidus", "title": "Streptomyces candidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014207445.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908435", "wgs_master": "JACHEM000000000.1", "refseq_category": "na", "taxid": "67283", "species_taxid": "67283", "organism_name": "Streptomyces candidus", "infraspecific_name": "strain=DSM 40141", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420744v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014207445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/207/445/GCF_014207445.1_ASM1420744v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7403230", "genome_size_ungapped": "7402835", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014207445.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "6706", "protein_coding_gene_count": "6452", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces candidus" ], "sample_taxid": [ "67283" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.999 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7403230", "Number of Sequences": "64", "Longest Sequences (bp)": "711327", "N50 (bp)": "349232", "Gap Ratio (%)": "0.005336", "GCcontent (%)": "71.2", "Number of CDSs": "6764", "Average Protein Length": "313.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "2", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces candidus", "strain": "strain=DSM 40141", "accession": "GCA_014207445.1", "taxid": 67283, "species_taxid": 67283, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2433, "total_fragments": 2436, 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"strain=ATCC 10712", "accession": "GCA_021432215.1", "taxid": 54571, "species_taxid": 54571, "relation_to_type": "type", "validated": true, "ani": 82.2899, "matched_fragments": 1098, "total_fragments": 2436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces melanogenes", "strain": "strain=JCM 4398", "accession": "GCA_014649795.1", "taxid": 67326, "species_taxid": 67326, "relation_to_type": "type", "validated": true, "ani": 82.252, "matched_fragments": 1310, "total_fragments": 2436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces exfoliatus", "strain": "strain=NRRL B-2924", "accession": "GCA_000725545.1", "taxid": 1905, "species_taxid": 1905, "relation_to_type": "type", "validated": true, "ani": 82.0287, "matched_fragments": 1304, "total_fragments": 2436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces exfoliatus", "strain": "strain=NRRL B-2924", "accession": "GCA_000718175.1", 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