{ "type": "genome", "identifier": "GCF_014207795.1", "organism": "Kribbella sandramycini", "title": "Kribbella sandramycini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014207795.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908545", "wgs_master": "JACHKF000000000.1", "refseq_category": "reference genome", "taxid": "60450", "species_taxid": "60450", "organism_name": "Kribbella sandramycini", "infraspecific_name": "strain=DSM 15626", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420779v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014207795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/207/795/GCF_014207795.1_ASM1420779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8120153", "genome_size_ungapped": "8120153", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014207795.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "7508", "protein_coding_gene_count": "7417", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella sandramycini" ], "sample_taxid": [ "60450" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8120153", "Number of Sequences": "1", "Longest Sequences (bp)": "8120153", "N50 (bp)": "8120153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.1", "Number of CDSs": "7548", "Average Protein Length": "333.9", "Coding Ratio (%)": "93.1", "Number of rRNAs": "9", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella sandramycini", "strain": "strain=DSM 15626", "accession": "GCA_014207795.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2705, "total_fragments": 2706, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=ATCC 39419", "accession": "GCA_013131805.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 99.9925, "matched_fragments": 2686, "total_fragments": 2706, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 84.6019, "matched_fragments": 1882, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 83.5709, "matched_fragments": 1444, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 83.3865, "matched_fragments": 1596, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 83.3479, "matched_fragments": 1656, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 83.2914, "matched_fragments": 1593, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella soli", "strain": "strain=KCTC 29219", "accession": "GCA_004331345.1", "taxid": 1124743, "species_taxid": 1124743, "relation_to_type": "type", "validated": true, "ani": 83.2714, "matched_fragments": 1609, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 83.1726, "matched_fragments": 1654, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella pittospori", "strain": "strain=NRRL B-24813", "accession": "GCA_004331465.1", "taxid": 722689, "species_taxid": 722689, "relation_to_type": "type", "validated": true, "ani": 83.1703, "matched_fragments": 1637, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 83.1594, "matched_fragments": 1623, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 83.0888, "matched_fragments": 1575, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 83.0158, "matched_fragments": 1536, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 82.8795, "matched_fragments": 1650, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 78.0298, "matched_fragments": 559, "total_fragments": 2706, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013131805.1", "gtdb_species": "s__Kribbella sandramycini", "ani": 99.9925, "matched_fragments": 2686, "total_fragments": 2706, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004348455.1", "gtdb_species": "s__Kribbella albertanoniae", "ani": 85.2274, "matched_fragments": 1860, "total_fragments": 2706, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349055.1", "gtdb_species": "s__Kribbella antibiotica", "ani": 84.586, "matched_fragments": 1885, "total_fragments": 2706, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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