{ "type": "genome", "identifier": "GCF_014207985.1", "organism": "Nonomuraea rubra", "title": "Nonomuraea rubra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014207985.1", "bioproject": "PRJNA224116", "biosample": "SAMN14510225", "wgs_master": "JACHMI000000000.1", "refseq_category": "reference genome", "taxid": "46180", "species_taxid": "46180", "organism_name": "Nonomuraea rubra", "infraspecific_name": "strain=DSM 43768", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420798v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014207985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/207/985/GCF_014207985.1_ASM1420798v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12876814", "genome_size_ungapped": "12876814", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014207985.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "12086", "protein_coding_gene_count": "11886", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea rubra" ], "sample_taxid": [ "46180" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "3.438 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.52, "strain_heterogeneity": 57.14, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12876814", "Number of Sequences": "2", "Longest Sequences (bp)": "12780081", "N50 (bp)": "12780081", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "12201", "Average Protein Length": "320.7", "Coding Ratio (%)": "91.1", "Number of rRNAs": "15", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 4292, "total_fragments": 4292, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea candida", "strain": "strain=NRRL B-24552", "accession": "GCA_000725485.1", "taxid": 359159, "species_taxid": 359159, "relation_to_type": "type", "validated": true, "ani": 88.1292, "matched_fragments": 2703, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea fuscirosea", "strain": "strain=CGMCC 4.7104", "accession": "GCA_003001935.1", "taxid": 1291556, "species_taxid": 1291556, "relation_to_type": "type", "validated": true, "ani": 87.0278, "matched_fragments": 2743, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea solani", "strain": "strain=CGMCC 4.7037", "accession": "GCA_900108335.1", "taxid": 1144553, "species_taxid": 1144553, "relation_to_type": "type", "validated": true, "ani": 86.6026, "matched_fragments": 2894, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 85.8782, "matched_fragments": 2708, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 85.8599, "matched_fragments": 2698, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 85.7081, "matched_fragments": 2178, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea terrae", "strain": "strain=CH32", "accession": "GCA_004348995.1", "taxid": 2530383, "species_taxid": 2530383, "relation_to_type": "type", "validated": true, "ani": 85.6946, "matched_fragments": 2225, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 85.619, "matched_fragments": 2515, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea deserti", "strain": "strain=KC310", "accession": "GCA_004348685.1", "taxid": 1848322, "species_taxid": 1848322, "relation_to_type": "type", "validated": true, "ani": 85.5473, "matched_fragments": 2364, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, 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85.2281, "matched_fragments": 2306, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea mesophila", "strain": "strain=6K102", "accession": "GCA_004352805.1", "taxid": 2530382, "species_taxid": 2530382, "relation_to_type": "type", "validated": true, "ani": 85.1824, "matched_fragments": 2251, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 84.0787, "matched_fragments": 1329, "total_fragments": 4292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 82.9713, "matched_fragments": 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