{ "type": "genome", "identifier": "GCF_014212055.1", "organism": "Cohnella zeiphila", "title": "Cohnella zeiphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014212055.1", "bioproject": "PRJNA224116", "biosample": "SAMN15716785", "wgs_master": "JACJVO000000000.1", "refseq_category": "reference genome", "taxid": "2761120", "species_taxid": "2761120", "organism_name": "Cohnella zeiphila", "infraspecific_name": "strain=CBP-2801", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/16", "asm_name": "ASM1421205v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_014212055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/212/055/GCF_014212055.1_ASM1421205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7924106", "genome_size_ungapped": "7923519", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "95", "contig_count": "95", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014212055.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "6979", "protein_coding_gene_count": "6816", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-16", "dateModified": "2020-08-16", "datePublished": "2020-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella zeiphila" ], "sample_taxid": [ "2761120" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Peoria, IL" ], "sample_host_location_id": [], "data_size": "2.223 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7924106", "Number of Sequences": "95", "Longest Sequences (bp)": "577486", "N50 (bp)": "229943", "Gap Ratio (%)": "0.008152", "GCcontent (%)": "58.7", "Number of CDSs": "6956", "Average Protein Length": "334.1", "Coding Ratio (%)": "88.0", "Number of rRNAs": "2", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2589, "total_fragments": 2595, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 80.6344, "matched_fragments": 747, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 80.5996, "matched_fragments": 877, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_014212015.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 79.656, "matched_fragments": 592, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella 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"accession": "GCA_014212135.1", "taxid": 557557, "species_taxid": 557557, "relation_to_type": "type", "validated": true, "ani": 79.2123, "matched_fragments": 700, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 78.2267, "matched_fragments": 444, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 77.9429, "matched_fragments": 610, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, 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"total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014212055.1", "gtdb_species": "s__Cohnella zeiphila", "ani": 100.0, "matched_fragments": 2589, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000429825.1", "gtdb_species": "s__Cohnella thermotolerans", "ani": 80.6321, "matched_fragments": 748, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212175.1", "gtdb_species": "s__Cohnella xylanilytica", "ani": 80.5976, "matched_fragments": 878, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212015.1", "gtdb_species": "s__Cohnella lubricantis", "ani": 79.6577, "matched_fragments": 591, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", 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