{ "type": "genome", "identifier": "GCF_014212315.1", "organism": "Nocardioides luti", "title": "Nocardioides luti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Incheon National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014212315.1", "bioproject": "PRJNA224116", "biosample": "SAMN15745141", "wgs_master": "JACKXE000000000.1", "refseq_category": "reference genome", "taxid": "2761101", "species_taxid": "2761101", "organism_name": "Nocardioides luti", "infraspecific_name": "strain=KIGAM211", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/16", "asm_name": "ASM1421231v1", "asm_submitter": "Incheon National University", "gbrs_paired_asm": "GCA_014212315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/212/315/GCF_014212315.1_ASM1421231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4516737", "genome_size_ungapped": "4516544", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014212315.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4295", "protein_coding_gene_count": "4230", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-16", "dateModified": "2020-08-16", "datePublished": "2020-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides luti" ], "sample_taxid": [ "2761101" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Sancheong-gun" ], "sample_host_location_id": [], "data_size": "1.186 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4516737", "Number of Sequences": "3", "Longest Sequences (bp)": "4004368", "N50 (bp)": "4004368", "Gap Ratio (%)": "0.004273", "GCcontent (%)": "72.3", "Number of CDSs": "4287", "Average Protein Length": "325.2", "Coding Ratio (%)": "92.6", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1504, "total_fragments": 1504, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 84.603, "matched_fragments": 983, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 83.4483, "matched_fragments": 913, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 82.6657, "matched_fragments": 862, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 82.6436, "matched_fragments": 857, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 82.5479, "matched_fragments": 867, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 82.4502, "matched_fragments": 936, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.4309, "matched_fragments": 844, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 82.4069, "matched_fragments": 928, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=CGMCC 1.11147", "accession": "GCA_900103935.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 82.3756, "matched_fragments": 906, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.3229, "matched_fragments": 840, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 82.0804, "matched_fragments": 830, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 81.8426, "matched_fragments": 895, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 81.5076, "matched_fragments": 816, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 81.0911, "matched_fragments": 756, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.9455, "matched_fragments": 696, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 80.5288, "matched_fragments": 786, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides immobilis", "strain": "strain=CCTCC AB 2017083", "accession": "GCA_003515065.1", "taxid": 2049295, "species_taxid": 2049295, "relation_to_type": "type", "validated": true, "ani": 80.2846, "matched_fragments": 770, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 80.222, "matched_fragments": 706, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 79.7852, 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