{ "type": "genome", "identifier": "GCF_014218705.1", "organism": "Kluyvera sichuanensis", "title": "Kluyvera sichuanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014218705.1", "bioproject": "PRJNA224116", "biosample": "SAMN14563383", "wgs_master": "JABBJF000000000.1", "refseq_category": "na", "taxid": "2725494", "species_taxid": "2725494", "organism_name": "Kluyvera sichuanensis", "infraspecific_name": "strain=090646", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/17", "asm_name": "ASM1421870v1", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_014218705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/218/705/GCF_014218705.1_ASM1421870v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5476810", "genome_size_ungapped": "5476810", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "117", "contig_count": "117", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014218705.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5427", "protein_coding_gene_count": "5200", "non_coding_gene_count": "118", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-17", "dateModified": "2020-08-17", "datePublished": "2020-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Kluyvera sichuanensis" ], "sample_taxid": [ "2725494" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu, Sichuan" ], "sample_host_location_id": [], "data_size": "1.558 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5476810", "Number of Sequences": "117", "Longest Sequences (bp)": "486928", "N50 (bp)": "144979", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.5", "Number of CDSs": "5254", "Average Protein Length": "304.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NCTC12125", "accession": "GCA_900635475.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 85.5137, "matched_fragments": 1201, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NBRC 102594", "accession": "GCA_001598315.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 85.4123, "matched_fragments": 1171, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 83.2153, "matched_fragments": 1022, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 83.0952, "matched_fragments": 1009, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.6135, "matched_fragments": 911, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 82.453, "matched_fragments": 877, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 82.4265, "matched_fragments": 881, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 82.2453, "matched_fragments": 935, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella aerogenes", "strain": "strain=KCTC 2190", "accession": "GCA_000215745.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 81.9688, "matched_fragments": 937, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": 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