{
    "type": "genome",
    "identifier": "GCF_014218725.1",
    "organism": "Brevundimonas huaxiensis",
    "title": "Brevundimonas huaxiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "West China Hospital, Sichuan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014218725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14563382",
        "wgs_master": "JABBJE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2725493",
        "species_taxid": "2725493",
        "organism_name": "Brevundimonas huaxiensis",
        "infraspecific_name": "strain=090558",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/17",
        "asm_name": "ASM1421872v1",
        "asm_submitter": "West China Hospital, Sichuan University",
        "gbrs_paired_asm": "GCA_014218725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/218/725/GCF_014218725.1_ASM1421872v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3163722",
        "genome_size_ungapped": "3163722",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014218725.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3178",
        "protein_coding_gene_count": "3086",
        "non_coding_gene_count": "53",
        "pubmed_id": "34232096"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-17",
    "dateModified": "2020-08-17",
    "datePublished": "2020-08-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevundimonas huaxiensis"
        ],
        "sample_taxid": [
            "2725493"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Chengdu, Sichuan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.867 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3163722",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "1033002",
        "N50 (bp)": "355886",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.4",
        "Number of CDSs": "3148",
        "Average Protein Length": "304.3",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brevundimonas huaxiensis",
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                "taxid": 2725493,
                "species_taxid": 2725493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1037,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Brevundimonas vesicularis",
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                "accession": "GCA_001592205.1",
                "taxid": 41276,
                "species_taxid": 41276,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Brevundimonas mediterranea",
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                "accession": "GCA_014196125.1",
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                "species_taxid": 74329,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas aurantiaca",
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                "species_taxid": 74316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3658,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas albigilva",
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                "accession": "GCA_023503965.1",
                "taxid": 1312364,
                "species_taxid": 1312364,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 738,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas nasdae",
                "strain": "strain=JCM 11415",
                "accession": "GCA_016654005.1",
                "taxid": 172043,
                "species_taxid": 172043,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3499,
                "matched_fragments": 736,
                "total_fragments": 1040,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas guildfordensis",
                "strain": "strain=Sa3CVA3",
                "accession": "GCA_014836405.1",
                "taxid": 2762241,
                "species_taxid": 2762241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1156,
                "matched_fragments": 598,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas lenta",
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                "accession": "GCA_014196335.1",
                "taxid": 424796,
                "species_taxid": 424796,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8139,
                "matched_fragments": 600,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas vitisensis",
                "strain": "strain=GR-TSA-9",
                "accession": "GCA_016656965.1",
                "taxid": 2800818,
                "species_taxid": 2800818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.496,
                "matched_fragments": 538,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas pishanensis",
                "strain": "strain=CHPC 1.3453",
                "accession": "GCA_022750635.1",
                "taxid": 2896315,
                "species_taxid": 2896315,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3825,
                "matched_fragments": 391,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium aquaticum",
                "strain": "strain=KACC 18306",
                "accession": "GCA_022695515.1",
                "taxid": 1763816,
                "species_taxid": 1763816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.189,
                "matched_fragments": 351,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000813765.1",
                "gtdb_species": "s__Brevundimonas nasdae_A",
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                "matched_fragments": 854,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.42",
                "min_intra_species_ani": "95.42",
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                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_005484585.1",
                "gtdb_species": "s__Brevundimonas sp005484585",
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                "matched_fragments": 885,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
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                "mean_intra_species_ani": "95.32",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
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                "mean_intra_species_ani": "95.70",
                "min_intra_species_ani": "95.00",
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            {
                "accession": "GCF_002157625.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "huaxiensis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}