{ "type": "genome", "identifier": "GCF_014235765.1", "organism": "Pseudomonas baltica", "title": "Pseudomonas baltica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014235765.1", "bioproject": "PRJNA224116", "biosample": "SAMN15808892", "wgs_master": "JACMYH000000000.1", "refseq_category": "reference genome", "taxid": "2762576", "species_taxid": "2762576", "organism_name": "Pseudomonas baltica", "infraspecific_name": "strain=MBT-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/18", "asm_name": "ASM1423576v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_014235765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/235/765/GCF_014235765.1_ASM1423576v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4582415", "genome_size_ungapped": "4582415", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014235765.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "4153", "protein_coding_gene_count": "4056", "non_coding_gene_count": "64", "pubmed_id": "33620302" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-18", "dateModified": "2020-08-18", "datePublished": "2020-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas baltica" ], "sample_taxid": [ "2762576" ], "sample_host_organism": [ "cow" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Lower Saxony" ], "sample_host_location_id": [], "data_size": "1.274 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4582415", "Number of Sequences": "28", "Longest Sequences (bp)": "2109080", "N50 (bp)": "639889", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "4100", "Average Protein Length": "331.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas baltica", "strain": "strain=MBT-2", "accession": "GCA_014235765.1", "taxid": 2762576, "species_taxid": 2762576, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1512, "total_fragments": 1516, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas rhizosphaerae", "strain": "strain=DSM 16299", "accession": "GCA_000761155.1", "taxid": 216142, "species_taxid": 216142, "relation_to_type": "type", "validated": true, "ani": 89.178, "matched_fragments": 1350, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas coleopterorum", "strain": "strain=LMG 28558", "accession": "GCA_900105555.1", "taxid": 1605838, "species_taxid": 1605838, "relation_to_type": "type", "validated": true, "ani": 88.9659, "matched_fragments": 1310, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 82.3519, "matched_fragments": 873, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas eucalypticola", "strain": "strain=NP-1", "accession": "GCA_013374995.1", "taxid": 2599595, "species_taxid": 2599595, "relation_to_type": "type", "validated": true, "ani": 82.2051, "matched_fragments": 869, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=NBRC 103040", "accession": "GCA_000730585.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.1675, "matched_fragments": 821, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 82.0483, "matched_fragments": 820, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.0118, "matched_fragments": 830, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 81.8986, "matched_fragments": 816, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, "relation_to_type": "type", "validated": true, "ani": 81.826, "matched_fragments": 773, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 81.818, "matched_fragments": 862, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 81.344, "matched_fragments": 801, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fuscovaginae", "strain": "strain=LMG 2158", "accession": "GCA_900108595.1", "taxid": 50340, "species_taxid": 50340, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3438, "matched_fragments": 814, "total_fragments": 1516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, 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