{ "type": "genome", "identifier": "GCF_014235875.1", "organism": "Croceivirga lutea", "title": "Croceivirga lutea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014235875.1", "bioproject": "PRJNA224116", "biosample": "SAMN15744845", "wgs_master": "JACJUK000000000.1", "refseq_category": "reference genome", "taxid": "1775167", "species_taxid": "1775167", "organism_name": "Croceivirga lutea", "infraspecific_name": "strain=CSW06", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/18", "asm_name": "ASM1423587v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_014235875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/235/875/GCF_014235875.1_ASM1423587v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3449557", "genome_size_ungapped": "3449557", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014235875.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "3041", "protein_coding_gene_count": "2989", "non_coding_gene_count": "43", "pubmed_id": "28086077" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-18", "dateModified": "2020-08-18", "datePublished": "2020-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceivirga lutea" ], "sample_taxid": [ "1775167" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" ], "sample_host_location_id": [], "data_size": "0.963 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3449557", "Number of Sequences": "19", "Longest Sequences (bp)": "766404", "N50 (bp)": "484557", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "2981", "Average Protein Length": "350.7", "Coding Ratio (%)": "90.9", "Number of rRNAs": "5", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceivirga lutea", "strain": "strain=CSW06", "accession": "GCA_014235875.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1140, "total_fragments": 1141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CGMCC 1.15761", "accession": "GCA_014643615.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 99.9977, "matched_fragments": 1137, "total_fragments": 1141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Croceivirga radicis", "strain": "strain=HSG9", "accession": "GCA_002072105.2", "taxid": 1929488, "species_taxid": 1929488, "relation_to_type": "type", "validated": true, "ani": 77.885, "matched_fragments": 248, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 76.9475, "matched_fragments": 185, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.8472, "matched_fragments": 131, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.7175, "matched_fragments": 198, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.6353, "matched_fragments": 169, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.6232, "matched_fragments": 62, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga algicola", "strain": "strain=DSM 14237", "accession": "GCA_000186265.1", "taxid": 59600, "species_taxid": 59600, "relation_to_type": "type", "validated": true, "ani": 76.5952, "matched_fragments": 162, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda zhangzhouensis", "strain": "strain=CGMCC 1.11028", "accession": "GCA_900102925.1", "taxid": 1073328, "species_taxid": 1073328, "relation_to_type": "type", "validated": true, "ani": 76.5878, "matched_fragments": 128, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda zhangzhouensis", "strain": "strain=DSM 25030", "accession": "GCA_900106825.1", "taxid": 1073328, "species_taxid": 1073328, "relation_to_type": "type", "validated": true, "ani": 76.571, "matched_fragments": 127, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 76.5535, "matched_fragments": 130, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.5174, "matched_fragments": 100, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia phycicola", "strain": "strain=DSM 21425", "accession": "GCA_900141885.1", "taxid": 579105, "species_taxid": 579105, "relation_to_type": "type", "validated": true, "ani": 76.226, "matched_fragments": 110, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum algae", "strain": "strain=10Alg 115", "accession": "GCA_006065315.1", "taxid": 2584122, "species_taxid": 2584122, "relation_to_type": "type", "validated": true, "ani": 76.1845, "matched_fragments": 100, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 76.1809, "matched_fragments": 100, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia russellii", "strain": "strain=KMM 3677", "accession": "GCA_018728565.1", "taxid": 248907, "species_taxid": 248907, "relation_to_type": "type", "validated": true, "ani": 76.1267, "matched_fragments": 108, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.1251, "matched_fragments": 84, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, "relation_to_type": "type", "validated": true, "ani": 76.1124, "matched_fragments": 115, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia mobilis", "strain": "strain=DSM 19841", "accession": "GCA_000423405.1", "taxid": 369791, "species_taxid": 369791, "relation_to_type": "type", "validated": true, "ani": 76.0312, "matched_fragments": 69, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 75.8612, "matched_fragments": 87, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroflexus salarius", "strain": "strain=DSM 25661", "accession": "GCA_900129035.1", "taxid": 1155689, "species_taxid": 1155689, "relation_to_type": "type", "validated": true, "ani": 75.7665, "matched_fragments": 62, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014235875.1", "gtdb_species": "s__Croceivirga lutea", "ani": 100.0, "matched_fragments": 1140, "total_fragments": 1141, "gtdb_taxonomy": 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