{ "type": "genome", "identifier": "GCF_014236655.1", "organism": "Pseudomonas kielensis", "title": "Pseudomonas kielensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014236655.1", "bioproject": "PRJNA224116", "biosample": "SAMN15808891", "wgs_master": "JACMYG000000000.1", "refseq_category": "na", "taxid": "2762577", "species_taxid": "2762577", "organism_name": "Pseudomonas kielensis", "infraspecific_name": "strain=MBT-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/18", "asm_name": "ASM1423665v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_014236655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/236/655/GCF_014236655.1_ASM1423665v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6047000", "genome_size_ungapped": "6047000", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "121", "contig_count": "121", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014236655.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "5689", "protein_coding_gene_count": "5496", "non_coding_gene_count": "68", "pubmed_id": "33620302" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-18", "dateModified": "2020-08-18", "datePublished": "2020-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas kielensis" ], "sample_taxid": [ "2762577" ], "sample_host_organism": [ "cow" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Lower Saxony" ], "sample_host_location_id": [], "data_size": "1.701 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6047000", "Number of Sequences": "121", "Longest Sequences (bp)": "388748", "N50 (bp)": "153025", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.8", "Number of CDSs": "5536", "Average Protein Length": "317.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas kielensis", "strain": "strain=MBT-1", "accession": "GCA_014236655.1", "taxid": 2762577, "species_taxid": 2762577, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1957, "total_fragments": 1961, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 85.4668, "matched_fragments": 1282, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 85.4464, "matched_fragments": 1287, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 85.413, "matched_fragments": 1245, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 85.4127, "matched_fragments": 1317, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=DSM 17967", "accession": "GCA_007858265.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3879, "matched_fragments": 1307, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=LMG 21607", "accession": "GCA_900106065.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3798, "matched_fragments": 1320, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 85.3648, "matched_fragments": 1285, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=DSM 16768", "accession": "GCA_001042905.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 85.3516, "matched_fragments": 1237, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=NBRC 103147", "accession": "GCA_002091695.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3205, "matched_fragments": 1299, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 85.3165, "matched_fragments": 1253, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 85.1802, "matched_fragments": 1209, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 85.1707, "matched_fragments": 1207, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 85.1278, "matched_fragments": 1238, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 85.1175, "matched_fragments": 1244, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas allokribbensis", "strain": "strain=IzPS23", "accession": "GCA_014863605.1", "taxid": 2774460, "species_taxid": 2774460, "relation_to_type": "type", "validated": true, "ani": 85.0523, "matched_fragments": 1247, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas umsongensis", "strain": "strain=DSM 16611", "accession": "GCA_002236105.1", "taxid": 198618, "species_taxid": 198618, "relation_to_type": "type", "validated": true, "ani": 84.8839, "matched_fragments": 1305, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 84.4561, "matched_fragments": 1222, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1948, "matched_fragments": 1148, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=LMG 21611", "accession": "GCA_900103345.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 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"below_threshold" }, { "organism_name": "Pseudomonas cichorii", "strain": "strain=LMG 2162", "accession": "GCA_015471425.1", "taxid": 36746, "species_taxid": 36746, "relation_to_type": "suspected-type", "validated": true, "ani": 81.395, "matched_fragments": 835, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 79.1238, "matched_fragments": 545, "total_fragments": 1961, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014236655.1", "gtdb_species": "s__Pseudomonas_E kielensis", "ani": 100.0, "matched_fragments": 1957, "total_fragments": 1961, "gtdb_taxonomy": 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