{
    "type": "genome",
    "identifier": "GCF_014266025.1",
    "organism": "Nocardioides deserti",
    "title": "Nocardioides deserti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China CDC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014266025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15825154",
        "wgs_master": "JACMYC000000000.1",
        "refseq_category": "na",
        "taxid": "1588644",
        "species_taxid": "1588644",
        "organism_name": "Nocardioides deserti",
        "infraspecific_name": "strain=SC8A-24",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/22",
        "asm_name": "ASM1426602v1",
        "asm_submitter": "China CDC",
        "gbrs_paired_asm": "GCA_014266025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/266/025/GCF_014266025.1_ASM1426602v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4204645",
        "genome_size_ungapped": "4204645",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014266025.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "4052",
        "protein_coding_gene_count": "3966",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-22",
    "dateModified": "2020-08-22",
    "datePublished": "2020-08-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardioides deserti"
        ],
        "sample_taxid": [
            "1588644"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.100 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4204645",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "704536",
        "N50 (bp)": "333885",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.1",
        "Number of CDSs": "3991",
        "Average Protein Length": "322.1",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nocardioides deserti",
                "strain": "strain=SC8A-24",
                "accession": "GCA_014266025.1",
                "taxid": 1588644,
                "species_taxid": 1588644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1380,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardioides deserti",
                "strain": "strain=CGMCC 4.7183",
                "accession": "GCA_014646035.1",
                "taxid": 1588644,
                "species_taxid": 1588644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9958,
                "matched_fragments": 1377,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardioides dongkuii",
                "strain": "strain=S-713",
                "accession": "GCA_014127485.1",
                "taxid": 2760089,
                "species_taxid": 2760089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4407,
                "matched_fragments": 874,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides ginsengisegetis",
                "strain": "strain=DSM 21349",
                "accession": "GCA_014138045.1",
                "taxid": 661491,
                "species_taxid": 661491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4719,
                "matched_fragments": 845,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides lianchengensis",
                "strain": "strain=CGMCC 4.6858",
                "accession": "GCA_013409225.1",
                "taxid": 1045774,
                "species_taxid": 1045774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4488,
                "matched_fragments": 930,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides luti",
                "strain": "strain=KIGAM211",
                "accession": "GCA_014212315.1",
                "taxid": 2761101,
                "species_taxid": 2761101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4264,
                "matched_fragments": 856,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides lianchengensis",
                "strain": "strain=CGMCC 4.6858",
                "accession": "GCA_900101465.1",
                "taxid": 1045774,
                "species_taxid": 1045774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4244,
                "matched_fragments": 926,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides salarius",
                "strain": "strain=DSM 18239",
                "accession": "GCA_015070765.1",
                "taxid": 374513,
                "species_taxid": 374513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2451,
                "matched_fragments": 833,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides salarius",
                "strain": "strain=DSM 18239",
                "accession": "GCA_015339545.1",
                "taxid": 374513,
                "species_taxid": 374513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2093,
                "matched_fragments": 839,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides kribbensis",
                "strain": "strain=DSM 16314",
                "accession": "GCA_015070375.1",
                "taxid": 305517,
                "species_taxid": 305517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0881,
                "matched_fragments": 829,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides ungokensis",
                "strain": "strain=LMG 28591",
                "accession": "GCA_013466985.1",
                "taxid": 1643322,
                "species_taxid": 1643322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0537,
                "matched_fragments": 771,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides panaciterrulae",
                "strain": "strain=DSM 21350",
                "accession": "GCA_013409645.1",
                "taxid": 661492,
                "species_taxid": 661492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0182,
                "matched_fragments": 774,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides soli",
                "strain": "strain=DSM 105498",
                "accession": "GCA_014191495.1",
                "taxid": 1036020,
                "species_taxid": 1036020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9817,
                "matched_fragments": 841,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides marinus",
                "strain": "strain=DSM 18248",
                "accession": "GCA_013408145.1",
                "taxid": 374514,
                "species_taxid": 374514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9035,
                "matched_fragments": 815,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides okcheonensis",
                "strain": "strain=MMS20-HV4-12",
                "accession": "GCA_020991065.1",
                "taxid": 2894081,
                "species_taxid": 2894081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2123,
                "matched_fragments": 751,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides donggukensis",
                "strain": "strain=MJB4",
                "accession": "GCA_014842875.1",
                "taxid": 2774019,
                "species_taxid": 2774019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8776,
                "matched_fragments": 653,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides coralli",
                "strain": "strain=SCSIO 67246",
                "accession": "GCA_019880385.1",
                "taxid": 2872154,
                "species_taxid": 2872154,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5815,
                "matched_fragments": 647,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides humilatus",
                "strain": "strain=BN130099",
                "accession": "GCA_008373755.1",
                "taxid": 2607660,
                "species_taxid": 2607660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4451,
                "matched_fragments": 668,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides panacis",
                "strain": "strain=G188",
                "accession": "GCA_019039255.1",
                "taxid": 2849501,
                "species_taxid": 2849501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0417,
                "matched_fragments": 697,
                "total_fragments": 1384,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014266025.1",
                "gtdb_species": "s__Nocardioides deserti",
                "ani": 100.0,
                "matched_fragments": 1380,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011250565.1",
                "gtdb_species": "s__Nocardioides sp011250565",
                "ani": 94.8147,
                "matched_fragments": 1165,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013177455.1",
                "gtdb_species": "s__Nocardioides sp013177455",
                "ani": 88.4125,
                "matched_fragments": 1076,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014127485.1",
                "gtdb_species": "s__Nocardioides sp014127485",
                "ani": 83.4017,
                "matched_fragments": 877,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013155365.1",
                "gtdb_species": "s__Nocardioides sp013155365",
                "ani": 82.5146,
                "matched_fragments": 843,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014138045.1",
                "gtdb_species": "s__Nocardioides ginsengisegetis",
                "ani": 82.5092,
                "matched_fragments": 840,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.18",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014212315.1",
                "gtdb_species": "s__Nocardioides luti",
                "ani": 82.425,
                "matched_fragments": 856,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016907435.1",
                "gtdb_species": "s__Nocardioides salarius",
                "ani": 82.2482,
                "matched_fragments": 846,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002117935.1",
                "gtdb_species": "s__Nocardioides sp002117935",
                "ani": 82.2263,
                "matched_fragments": 818,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013466985.1",
                "gtdb_species": "s__Nocardioides ungokensis",
                "ani": 82.0443,
                "matched_fragments": 772,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015070375.1",
                "gtdb_species": "s__Nocardioides kribbensis",
                "ani": 82.0309,
                "matched_fragments": 835,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "97.79",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014191495.1",
                "gtdb_species": "s__Nocardioides soli",
                "ani": 82.0246,
                "matched_fragments": 837,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013409645.1",
                "gtdb_species": "s__Nocardioides panaciterrulae",
                "ani": 82.0081,
                "matched_fragments": 775,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018275325.1",
                "gtdb_species": "s__Nocardioides sp018275325",
                "ani": 81.1108,
                "matched_fragments": 760,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017916455.1",
                "gtdb_species": "s__Nocardioides sp017916455",
                "ani": 80.949,
                "matched_fragments": 694,
                "total_fragments": 1384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.295,
        "cell_length": 0.117,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.172,
        "optimum_ph": 7.323,
        "genome_size": 4214904.166,
        "gc_content": 71.317,
        "coding_genes": 4058.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.023,
        "motility": 0.217,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.893,
        "coccus_cell_shape": 0.021,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.085,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Nocardioides",
        "deserti"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}