{ "tc_result": [ { "organism_name": "Pseudomonas tensinigenes", "strain": "strain=ZA 5.3", "accession": "GCA_014268445.2", "taxid": 2745511, "species_taxid": 2745511, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2206, "total_fragments": 2207, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas crudilactis", "strain": "strain=UCMA 17988", "accession": "GCA_013433315.1", "taxid": 2697028, "species_taxid": 2697028, "relation_to_type": "type", "validated": true, "ani": 94.2287, "matched_fragments": 1978, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 92.8028, "matched_fragments": 1889, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zeae", "strain": "strain=OE 48.2", "accession": "GCA_014268485.2", "taxid": 2745510, "species_taxid": 2745510, "relation_to_type": "type", "validated": true, "ani": 92.7396, "matched_fragments": 1858, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas neuropathica", "strain": "strain=P155", "accession": "GCA_015461835.1", "taxid": 2730425, "species_taxid": 2730425, "relation_to_type": "type", "validated": true, "ani": 92.4974, "matched_fragments": 1846, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=a390", "accession": "GCA_003031005.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 89.5269, "matched_fragments": 1713, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=LMG 25716", "accession": "GCA_002813455.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 89.5248, "matched_fragments": 1718, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 88.1355, "matched_fragments": 1635, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 88.0675, "matched_fragments": 1723, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.1503, "matched_fragments": 1302, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 81.4808, "matched_fragments": 838, "total_fragments": 2207, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014268445.2", "gtdb_species": "s__Pseudomonas_E sp900187515", "ani": 100.0, "matched_fragments": 2206, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_013433315.1", "gtdb_species": "s__Pseudomonas_E crudilactis", "ani": 94.2304, "matched_fragments": 1977, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004011755.1", "gtdb_species": "s__Pseudomonas_E sp004011755", "ani": 93.6682, "matched_fragments": 1941, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "98.13", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005938625.1", "gtdb_species": "s__Pseudomonas_E fluorescens_BD", "ani": 92.7764, "matched_fragments": 1843, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015461835.1", "gtdb_species": "s__Pseudomonas_E neuropathica", "ani": 92.4974, "matched_fragments": 1846, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.48", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001648775.1", "gtdb_species": "s__Pseudomonas_E fluorescens_M", "ani": 91.5584, "matched_fragments": 1865, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001297015.1", "gtdb_species": "s__Pseudomonas_E sp001297015", "ani": 91.4567, "matched_fragments": 1801, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000282515.1", "gtdb_species": "s__Pseudomonas_E sp000282515", "ani": 90.4786, "matched_fragments": 1675, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }