{ "type": "genome", "identifier": "GCF_014268885.2", "organism": "Pseudomonas xantholysinigenes", "title": "Pseudomonas xantholysinigenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014268885.2", "bioproject": "PRJNA224116", "biosample": "SAMN15248328", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2745490", "species_taxid": "2745490", "organism_name": "Pseudomonas xantholysinigenes", "infraspecific_name": "strain=RW9S1A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1426888v2", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_014268885.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/268/885/GCF_014268885.2_ASM1426888v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5607668", "genome_size_ungapped": "5607668", "gc_percent": "64.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014268885.2-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "5004", "protein_coding_gene_count": "4861", "non_coding_gene_count": "98", "pubmed_id": "32752051;34442845" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas xantholysinigenes" ], "sample_taxid": [ "2745490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sri Lanka: Kurunegala" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5607668", "Number of Sequences": "1", "Longest Sequences (bp)": "5607668", "N50 (bp)": "5607668", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "4933", "Average Protein Length": "336.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "19", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1866, "total_fragments": 1869, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 91.7677, "matched_fragments": 1602, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_019823065.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 90.1705, "matched_fragments": 1528, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_000621225.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 90.0915, "matched_fragments": 1522, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas maumuensis", "strain": "strain=COW77", "accession": "GCA_019139675.1", "taxid": 2842354, "species_taxid": 2842354, "relation_to_type": "type", "validated": true, "ani": 89.5114, "matched_fragments": 1524, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas soli", "strain": "strain=LMG 27941", "accession": "GCA_900110655.1", "taxid": 1306993, "species_taxid": 1306993, "relation_to_type": "type", "validated": true, "ani": 89.2115, "matched_fragments": 1485, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas entomophila", "strain": "strain=L48", "accession": "GCA_000026105.1", "taxid": 312306, "species_taxid": 312306, "relation_to_type": "suspected-type", "validated": true, "ani": 89.0821, "matched_fragments": 1506, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5036, "matched_fragments": 1327, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.4332, "matched_fragments": 1289, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.3114, "matched_fragments": 799, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", 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412690, "relation_to_type": "type", "validated": true, "ani": 75.4007, "matched_fragments": 83, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola pindariensis", "strain": "strain=PON 10", "accession": "GCA_002936985.1", "taxid": 478010, "species_taxid": 478010, "relation_to_type": "type", "validated": true, "ani": 75.1725, "matched_fragments": 70, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014268885.2", "gtdb_species": "s__Pseudomonas_E sp014268885", "ani": 100.0, "matched_fragments": 1865, "total_fragments": 1869, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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