{ "type": "genome", "identifier": "GCF_014269025.2", "organism": "Pseudomonas promysalinigenes", "title": "Pseudomonas promysalinigenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014269025.2", "bioproject": "PRJNA224116", "biosample": "SAMN15248319", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "485898", "species_taxid": "485898", "organism_name": "Pseudomonas promysalinigenes", "infraspecific_name": "strain=RW10S1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1426902v2", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_014269025.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/269/025/GCF_014269025.2_ASM1426902v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5046521", "genome_size_ungapped": "5046521", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014269025.2-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "4588", "protein_coding_gene_count": "4429", "non_coding_gene_count": "100", "pubmed_id": "32752051;34442845" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas promysalinigenes" ], "sample_taxid": [ "485898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sri Lanka: Kurunegala" ], "sample_host_location_id": [], "data_size": "1.410 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5046521", "Number of Sequences": "1", "Longest Sequences (bp)": "5046521", "N50 (bp)": "5046521", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "4487", "Average Protein Length": "334.4", "Coding Ratio (%)": "89.2", "Number of rRNAs": "22", "Number of tRNAs": "74", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9662, "matched_fragments": 1318, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9584, "matched_fragments": 1369, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 86.1842, "matched_fragments": 1171, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 86.1016, "matched_fragments": 1251, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=NBRC 103162", "accession": "GCA_000730665.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 85.6293, "matched_fragments": 1178, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=DSM 15088", "accession": "GCA_000688275.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 85.5624, "matched_fragments": 1183, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 85.5159, "matched_fragments": 1230, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 85.3397, "matched_fragments": 1177, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 85.3193, "matched_fragments": 1216, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 85.1974, "matched_fragments": 1213, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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47880, "species_taxid": 47880, "relation_to_type": "type", "validated": true, "ani": 82.9425, "matched_fragments": 1041, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fulva", "strain": "strain=NBRC 16637", "accession": "GCA_000730565.1", "taxid": 47880, "species_taxid": 47880, "relation_to_type": "type", "validated": true, "ani": 82.8824, "matched_fragments": 1037, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014269025.2", "gtdb_species": "s__Pseudomonas_E monteilii_C", "ani": 100.0, "matched_fragments": 1680, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.50", 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