{ "type": "genome", "identifier": "GCF_014269205.2", "organism": "Pseudomonas kermanshahensis", "title": "Pseudomonas kermanshahensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014269205.2", "bioproject": "PRJNA224116", "biosample": "SAMN15248311", "wgs_master": "JABWRY000000000.2", "refseq_category": "na", "taxid": "2745482", "species_taxid": "2745482", "organism_name": "Pseudomonas kermanshahensis", "infraspecific_name": "strain=SWRI100", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/06", "asm_name": "ASM1426920v2", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_014269205.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/269/205/GCF_014269205.2_ASM1426920v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6146916", "genome_size_ungapped": "6146916", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014269205.2-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5533", "protein_coding_gene_count": "5350", "non_coding_gene_count": "103", "pubmed_id": "32752051" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-06", "dateModified": "2021-07-06", "datePublished": "2021-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas kermanshahensis" ], "sample_taxid": [ "2745482" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Kermanshah" ], "sample_host_location_id": [], "data_size": "1.706 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6146916", "Number of Sequences": "24", "Longest Sequences (bp)": "5463999", "N50 (bp)": "5463999", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "5431", "Average Protein Length": "334.8", "Coding Ratio (%)": "88.7", "Number of rRNAs": "22", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2040, "total_fragments": 2042, 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"strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 87.4575, "matched_fragments": 1535, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 87.2548, "matched_fragments": 1448, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 87.2263, "matched_fragments": 1472, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=NBRC 103162", "accession": 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