{ "type": "genome", "identifier": "GCF_014282275.1", "organism": "Spirosoma utsteinense", "title": "Spirosoma utsteinense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014282275.1", "bioproject": "PRJNA224116", "biosample": "SAMN11964661", "wgs_master": "VFIA00000000.1", "refseq_category": "reference genome", "taxid": "2585773", "species_taxid": "2585773", "organism_name": "Spirosoma utsteinense", "infraspecific_name": "strain=LMG 31447", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/24", "asm_name": "ASM1428227v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_014282275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/282/275/GCF_014282275.1_ASM1428227v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6855540", "genome_size_ungapped": "6855540", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "180", "contig_count": "180", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014282275.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "5699", "protein_coding_gene_count": "5606", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-24", "dateModified": "2020-08-24", "datePublished": "2020-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma utsteinense" ], "sample_taxid": [ "2585773" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Utsteinen" ], "sample_host_location_id": [], "data_size": "1.961 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6855540", "Number of Sequences": "180", "Longest Sequences (bp)": "334859", "N50 (bp)": "136211", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.1", "Number of CDSs": "5605", "Average Protein Length": "350.3", "Coding Ratio (%)": "85.9", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2194, "total_fragments": 2201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 80.3251, "matched_fragments": 1086, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.9877, "matched_fragments": 583, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.66, "matched_fragments": 573, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.5382, "matched_fragments": 524, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.4691, "matched_fragments": 454, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.4401, "matched_fragments": 373, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.3784, "matched_fragments": 410, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 77.2374, "matched_fragments": 429, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.2235, "matched_fragments": 431, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.0366, "matched_fragments": 436, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.0185, "matched_fragments": 342, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma montanum", "strain": "strain=HYT19", "accession": "GCA_003583365.1", "taxid": 2305895, "species_taxid": 2305895, "relation_to_type": "type", "validated": true, "ani": 76.9975, "matched_fragments": 400, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 76.9352, "matched_fragments": 363, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 76.9263, "matched_fragments": 337, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma terrae", "strain": "strain=KCTC 52035", "accession": "GCA_010435915.1", "taxid": 1968276, "species_taxid": 1968276, "relation_to_type": "type", "validated": true, "ani": 76.8805, "matched_fragments": 300, "total_fragments": 2201, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014282275.1", "gtdb_species": "s__Spirosoma utsteinense", "ani": 100.0, "matched_fragments": 2194, "total_fragments": 2201, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Spirosoma", "utsteinense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }