{ "type": "genome", "identifier": "GCF_014284235.1", "organism": "Undibacterium curvum", "title": "Undibacterium curvum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014284235.1", "bioproject": "PRJNA224116", "biosample": "SAMN15732458", "wgs_master": "JACOGD000000000.1", "refseq_category": "reference genome", "taxid": "2762294", "species_taxid": "2762294", "organism_name": "Undibacterium curvum", "infraspecific_name": "strain=CY22W", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/24", "asm_name": "ASM1428423v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_014284235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/284/235/GCF_014284235.1_ASM1428423v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4246954", "genome_size_ungapped": "4246762", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014284235.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3774", "protein_coding_gene_count": "3687", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-24", "dateModified": "2020-08-24", "datePublished": "2020-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Undibacterium curvum" ], "sample_taxid": [ "2762294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hunan Province" ], "sample_host_location_id": [], "data_size": "1.205 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4246954", "Number of Sequences": "57", "Longest Sequences (bp)": "691819", "N50 (bp)": "444134", "Gap Ratio (%)": "0.004521", "GCcontent (%)": "51.8", "Number of CDSs": "3683", "Average Protein Length": "334.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Undibacterium curvum", "strain": "strain=CY22W", "accession": "GCA_014284235.1", "taxid": 2762294, "species_taxid": 2762294, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1401, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Undibacterium crateris", "strain": "strain=B2R-29", "accession": "GCA_010078235.1", "taxid": 2528175, "species_taxid": 2528175, "relation_to_type": "type", "validated": true, "ani": 93.1355, "matched_fragments": 1217, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium rugosum", "strain": "strain=CY7W", "accession": "GCA_014284365.1", "taxid": 2762291, "species_taxid": 2762291, "relation_to_type": "type", "validated": true, "ani": 89.8776, "matched_fragments": 1174, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium griseum", "strain": "strain=FT31W", "accession": "GCA_014284195.1", "taxid": 2762295, "species_taxid": 2762295, "relation_to_type": "type", "validated": true, "ani": 79.4805, "matched_fragments": 481, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium oligocarboniphilum", "strain": "strain=EM 1", "accession": "GCA_013377855.1", "taxid": 666702, "species_taxid": 666702, "relation_to_type": "type", "validated": true, "ani": 79.2336, "matched_fragments": 451, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium hunanense", "strain": "strain=CY18W", "accession": "GCA_014284335.1", "taxid": 2762292, "species_taxid": 2762292, "relation_to_type": "type", "validated": true, "ani": 78.7594, "matched_fragments": 480, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium umbellatum", "strain": "strain=NL8W", "accession": "GCA_014284125.1", "taxid": 2762300, "species_taxid": 2762300, "relation_to_type": "type", "validated": true, "ani": 78.697, "matched_fragments": 426, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium pigrum", "strain": "strain=DSM 19792", "accession": "GCA_003201815.1", "taxid": 401470, "species_taxid": 401470, "relation_to_type": "type", "validated": true, "ani": 78.6485, "matched_fragments": 446, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium luofuense", "strain": "strain=LFS511W", "accession": "GCA_018139685.1", "taxid": 2828733, "species_taxid": 2828733, "relation_to_type": "type", "validated": true, "ani": 78.4156, "matched_fragments": 453, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium squillarum", "strain": "strain=KCTC 23917", "accession": "GCA_014652435.1", "taxid": 1131567, "species_taxid": 1131567, "relation_to_type": "type", "validated": true, "ani": 78.3435, "matched_fragments": 448, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 76.7238, "matched_fragments": 140, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, "relation_to_type": "type", "validated": true, "ani": 76.6026, "matched_fragments": 123, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 76.487, "matched_fragments": 89, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum massiliense", "strain": "strain=JC206", "accession": "GCA_000312045.1", "taxid": 1465823, "species_taxid": 1465823, "relation_to_type": "type", "validated": true, "ani": 76.4418, "matched_fragments": 124, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, "species_taxid": 2758568, "relation_to_type": "type", "validated": true, "ani": 76.4213, "matched_fragments": 133, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 76.2314, "matched_fragments": 128, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014284235.1", "gtdb_species": "s__Undibacterium sp014284235", "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010078235.1", "gtdb_species": "s__Undibacterium crateris", "ani": 93.1355, "matched_fragments": 1217, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284365.1", "gtdb_species": "s__Undibacterium sp014284365", "ani": 89.8776, "matched_fragments": 1174, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014284195.1", "gtdb_species": "s__Undibacterium sp014284195", "ani": 79.4618, "matched_fragments": 482, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377855.1", "gtdb_species": "s__Undibacterium oligocarboniphilum", "ani": 79.2439, "matched_fragments": 451, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009937955.1", "gtdb_species": "s__Undibacterium sp009937955", "ani": 78.7607, "matched_fragments": 438, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284125.1", "gtdb_species": "s__Undibacterium sp014284125", "ani": 78.7093, "matched_fragments": 426, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003201815.1", "gtdb_species": "s__Undibacterium pigrum", "ani": 78.6581, "matched_fragments": 445, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009937975.1", "gtdb_species": "s__Undibacterium sp009937975", "ani": 78.6536, "matched_fragments": 451, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016196925.1", "gtdb_species": "s__Undibacterium sp016196925", "ani": 78.515, "matched_fragments": 370, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018139685.1", "gtdb_species": "s__Undibacterium sp018139685", "ani": 78.4063, "matched_fragments": 453, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001427305.1", "gtdb_species": "s__Pseudoduganella sp001427305", "ani": 76.5794, "matched_fragments": 141, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.379, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 26.333, "optimum_tmp": null, "optimum_ph": 6.5, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Undibacterium", "curvum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }