{ "type": "genome", "identifier": "GCF_014284305.1", "organism": "Undibacterium seohonense", "title": "Undibacterium seohonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014284305.1", "bioproject": "PRJNA224116", "biosample": "SAMN15770456", "wgs_master": "JACOFW000000000.1", "refseq_category": "reference genome", "taxid": "1344950", "species_taxid": "1344950", "organism_name": "Undibacterium seohonense", "infraspecific_name": "strain=KACC 16656", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/24", "asm_name": "ASM1428430v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_014284305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/284/305/GCF_014284305.1_ASM1428430v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4868168", "genome_size_ungapped": "4867974", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "164", "contig_count": "164", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014284305.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4207", "protein_coding_gene_count": "4087", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-24", "dateModified": "2020-08-24", "datePublished": "2020-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Undibacterium seohonense" ], "sample_taxid": [ "1344950" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.392 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4868168", "Number of Sequences": "164", "Longest Sequences (bp)": "483510", "N50 (bp)": "153601", "Gap Ratio (%)": "0.003985", "GCcontent (%)": "46.3", "Number of CDSs": "4017", "Average Protein Length": "343.2", "Coding Ratio (%)": "85.0", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Undibacterium seohonense", "strain": "strain=KACC 16656", "accession": "GCA_014284305.1", "taxid": 1344950, "species_taxid": 1344950, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1574, "total_fragments": 1578, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Undibacterium amnicola", "strain": "strain=KCTC 52442", "accession": "GCA_014284275.1", "taxid": 1834038, "species_taxid": 1834038, "relation_to_type": "type", "validated": true, "ani": 83.6054, "matched_fragments": 842, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium flavidum", "strain": "strain=LX15W", "accession": "GCA_014284175.1", "taxid": 2762297, "species_taxid": 2762297, "relation_to_type": "type", "validated": true, "ani": 81.8234, "matched_fragments": 687, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium baiyunense", "strain": "strain=BYS107W", "accession": "GCA_018139645.1", "taxid": 2828731, "species_taxid": 2828731, "relation_to_type": "type", "validated": true, "ani": 81.1315, "matched_fragments": 721, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium macrobrachii", "strain": "strain=KCTC 23916", "accession": "GCA_014652415.1", "taxid": 1119058, "species_taxid": 1119058, "relation_to_type": "type", "validated": true, "ani": 81.0824, "matched_fragments": 689, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium fentianense", "strain": "strain=FT137W", "accession": "GCA_018139545.1", "taxid": 2828728, "species_taxid": 2828728, "relation_to_type": "type", "validated": true, "ani": 80.8392, "matched_fragments": 498, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium nitidum", "strain": "strain=LX22W", "accession": "GCA_014284155.1", "taxid": 2762298, "species_taxid": 2762298, "relation_to_type": "type", "validated": true, "ani": 79.9464, "matched_fragments": 377, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium jejuense", "strain": "strain=KACC 12607", "accession": "GCA_014284255.1", "taxid": 1344949, "species_taxid": 1344949, "relation_to_type": "type", "validated": true, "ani": 78.4203, "matched_fragments": 197, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium parvum", "strain": "strain=DSM 23061", "accession": "GCA_003955735.1", "taxid": 401471, "species_taxid": 401471, "relation_to_type": "type", "validated": true, "ani": 78.3176, "matched_fragments": 214, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium aquatile", "strain": "strain=CCTCC AB 2015119", "accession": "GCA_014699135.1", "taxid": 1537398, "species_taxid": 1537398, "relation_to_type": "type", "validated": true, "ani": 78.2464, "matched_fragments": 203, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014284305.1", "gtdb_species": "s__Undibacterium seohonense", "ani": 100.0, "matched_fragments": 1574, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002482715.1", "gtdb_species": "s__Undibacterium sp002482715", "ani": 84.2389, "matched_fragments": 634, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284275.1", "gtdb_species": "s__Undibacterium amnicola", "ani": 83.6212, "matched_fragments": 841, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284175.1", "gtdb_species": "s__Undibacterium sp014284175", "ani": 81.8082, "matched_fragments": 687, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018139645.1", "gtdb_species": "s__Undibacterium sp018139645", "ani": 81.128, "matched_fragments": 722, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014652415.1", "gtdb_species": "s__Undibacterium macrobrachii", "ani": 81.0814, "matched_fragments": 687, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018139545.1", "gtdb_species": "s__Undibacterium sp018139545", "ani": 80.8514, "matched_fragments": 497, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284115.1", "gtdb_species": "s__Undibacterium sp014284115", "ani": 79.9058, "matched_fragments": 382, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016200845.1", "gtdb_species": "s__Undibacterium sp016200845", "ani": 78.8733, "matched_fragments": 325, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014284255.1", "gtdb_species": "s__Undibacterium jejuense", "ani": 78.3916, "matched_fragments": 199, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014699135.1", "gtdb_species": "s__Undibacterium aquatile", "ani": 78.2464, "matched_fragments": 203, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.29", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.379, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": 6.5, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Undibacterium", "seohonense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }