{ "type": "genome", "identifier": "GCF_014287355.1", "organism": "Ruminococcus hominis", "title": "Ruminococcus hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014287355.1", "bioproject": "PRJNA224116", "biosample": "SAMN15808052", "wgs_master": "JACOPE000000000.1", "refseq_category": "reference genome", "taxid": "2763065", "species_taxid": "2763065", "organism_name": "Ruminococcus hominis", "infraspecific_name": "strain=NSJ-13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/24", "asm_name": "ASM1428735v1", "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "gbrs_paired_asm": "GCA_014287355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/287/355/GCF_014287355.1_ASM1428735v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3454944", "genome_size_ungapped": "3454944", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014287355.1-RS_2024_07_15", "annotation_date": "2024-07-15", "total_gene_count": "3214", "protein_coding_gene_count": "3078", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-24", "dateModified": "2020-08-24", "datePublished": "2020-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruminococcus hominis" ], "sample_taxid": [ "2763065" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.963 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3454944", "Number of Sequences": "3", "Longest Sequences (bp)": "3444226", "N50 (bp)": "3444226", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "3160", "Average Protein Length": "319.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "17", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, 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"organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 80.0332, "matched_fragments": 197, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 79.9622, "matched_fragments": 207, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=EGH7", "accession": "GCA_003402615.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 79.3742, "matched_fragments": 131, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hespellia stercorisuis", "strain": "strain=DSM 15480", "accession": "GCA_900142165.1", "taxid": 180311, "species_taxid": 180311, "relation_to_type": "type", "validated": true, "ani": 79.3461, "matched_fragments": 126, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 79.3396, "matched_fragments": 151, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 78.5781, "matched_fragments": 99, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=DSM 103426", "accession": 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