{ "tc_result": [ { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 79.9766, "matched_fragments": 494, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9231, "matched_fragments": 191, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8705, "matched_fragments": 190, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 77.8692, "matched_fragments": 182, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8297, "matched_fragments": 191, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 77.8082, "matched_fragments": 141, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.6244, "matched_fragments": 130, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 77.5872, "matched_fragments": 85, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporofaciens musculi", "strain": "strain=WCA-9-b2", "accession": "GCA_009830285.1", "taxid": 2681861, "species_taxid": 2681861, "relation_to_type": "type", "validated": true, "ani": 77.5529, "matched_fragments": 73, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.5484, "matched_fragments": 133, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea phocaeensis", "strain": "strain=Marseille-P4003", "accession": "GCA_900240315.1", "taxid": 2040291, "species_taxid": 2040291, "relation_to_type": "type", "validated": true, "ani": 77.4306, "matched_fragments": 103, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 77.2884, "matched_fragments": 87, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=EGH7", "accession": "GCA_003402615.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 77.2671, "matched_fragments": 90, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=DSM 103426", "accession": "GCA_004346095.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 77.0935, "matched_fragments": 88, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014287475.1", "gtdb_species": "s__Mediterraneibacter sp014287475", "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.75", 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"gtdb_species": "s__Bariatricus comes", "ani": 77.5638, "matched_fragments": 79, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bariatricus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.76", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCA_000403295.2", "gtdb_species": "s__Schaedlerella sp000403295", "ani": 77.422, "matched_fragments": 114, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910574195.1", "gtdb_species": "s__Schaedlerella sp910574195", 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900556835.1", "gtdb_species": "s__Faecalimonas sp900556835", "ani": 75.2618, "matched_fragments": 56, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }