{ "type": "genome", "identifier": "GCF_014287515.2", "organism": "Roseburia rectibacter", "title": "Roseburia rectibacter", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014287515.2", "bioproject": "PRJNA224116", "biosample": "SAMN15808669", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2763062", "species_taxid": "2763062", "organism_name": "Roseburia rectibacter", "infraspecific_name": "strain=NSJ-69", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/09", "asm_name": "ASM1428751v2", "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "gbrs_paired_asm": "GCA_014287515.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/287/515/GCF_014287515.2_ASM1428751v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3959994", "genome_size_ungapped": "3959994", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014287515.2-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3643", "protein_coding_gene_count": "3488", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-09", "dateModified": "2022-03-09", "datePublished": "2022-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseburia rectibacter" ], "sample_taxid": [ "2763062" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "1.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3959994", "Number of Sequences": "1", "Longest Sequences (bp)": "3959994", "N50 (bp)": "3959994", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "3626", "Average Protein Length": "322.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "10", "Number of tRNAs": "67", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia intestinalis", "strain": "strain=L1 82", "accession": "GCA_025151715.1", "taxid": 166486, "species_taxid": 166486, 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"organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 78.604, "matched_fragments": 222, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 78.2893, "matched_fragments": 156, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7562, "matched_fragments": 75, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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