{
    "type": "genome",
    "identifier": "GCF_014287895.1",
    "organism": "Lawsonibacter hominis",
    "title": "Lawsonibacter hominis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014287895.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15808689",
        "wgs_master": "JACOPP000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2763053",
        "species_taxid": "2763053",
        "organism_name": "Lawsonibacter hominis",
        "infraspecific_name": "strain=NSJ-51",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/24",
        "asm_name": "ASM1428789v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_014287895.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/287/895/GCF_014287895.1_ASM1428789v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3499704",
        "genome_size_ungapped": "3499704",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "115",
        "contig_count": "115",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014287895.1-RS_2024_08_13",
        "annotation_date": "2024-08-13",
        "total_gene_count": "3442",
        "protein_coding_gene_count": "3313",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-24",
    "dateModified": "2020-08-24",
    "datePublished": "2020-08-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lawsonibacter hominis"
        ],
        "sample_taxid": [
            "2763053"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.985 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3499704",
        "Number of Sequences": "115",
        "Longest Sequences (bp)": "371474",
        "N50 (bp)": "120007",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.3",
        "Number of CDSs": "3323",
        "Average Protein Length": "304.4",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.2828,
                "matched_fragments": 482,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.1608,
                "matched_fragments": 518,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
                "strain": "strain=DSM 107456",
                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6256,
                "matched_fragments": 382,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_003096335.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1462,
                "matched_fragments": 337,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=SRB-521-5-I",
                "accession": "GCA_004154955.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1193,
                "matched_fragments": 335,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_024622565.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1182,
                "matched_fragments": 320,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5401,
                "matched_fragments": 210,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerotruncus colihominis",
                "strain": "strain=DSM 17241",
                "accession": "GCA_025146135.1",
                "taxid": 169435,
                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1061,
                "matched_fragments": 58,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8649,
                "matched_fragments": 284,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerotruncus colihominis",
                "strain": "strain=DSM 17241",
                "accession": "GCA_000154565.1",
                "taxid": 169435,
                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7123,
                "matched_fragments": 59,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2656,
                "matched_fragments": 174,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.037,
                "matched_fragments": 79,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=JCM 31915",
                "accession": "GCA_010509575.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8379,
                "matched_fragments": 78,
                "total_fragments": 1117,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014287895.1",
                "gtdb_species": "s__NSJ-51 sp900549795",
                "ani": 100.0,
                "matched_fragments": 1112,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-51",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900626285.1",
                "gtdb_species": "s__Flavonifractor massiliensis_A",
                "ani": 82.1477,
                "matched_fragments": 493,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002161215.1",
                "gtdb_species": "s__Flavonifractor avistercoris",
                "ani": 81.3938,
                "matched_fragments": 547,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.82",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_002159455.1",
                "gtdb_species": "s__Flavonifractor sp002159455",
                "ani": 81.3489,
                "matched_fragments": 469,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000239295.1",
                "gtdb_species": "s__Flavonifractor plautii",
                "ani": 81.2455,
                "matched_fragments": 485,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.59",
                "num_clustered_genomes": 43,
                "status": "-"
            },
            {
                "accession": "GCF_002159265.1",
                "gtdb_species": "s__Flavonifractor sp002159265",
                "ani": 81.1928,
                "matched_fragments": 461,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900549565.1",
                "gtdb_species": "s__UMGS1202 sp900549565",
                "ani": 80.8922,
                "matched_fragments": 435,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__UMGS1202",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001244995.1",
                "gtdb_species": "s__Intestinimonas massiliensis",
                "ani": 80.6418,
                "matched_fragments": 407,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000169255.2",
                "gtdb_species": "s__Pseudoflavonifractor capillosus",
                "ani": 80.6393,
                "matched_fragments": 425,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019119165.1",
                "gtdb_species": "s__Flavonifractor intestinigallinarum",
                "ani": 80.6333,
                "matched_fragments": 350,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900626145.1",
                "gtdb_species": "s__Intestinimonas timonensis",
                "ani": 80.6237,
                "matched_fragments": 361,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014281125.1",
                "gtdb_species": "s__Instestinimonas_A gabonensis",
                "ani": 80.5119,
                "matched_fragments": 392,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Instestinimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904419835.1",
                "gtdb_species": "s__Pseudoflavonifractor sp904419835",
                "ani": 80.1933,
                "matched_fragments": 336,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900540545.1",
                "gtdb_species": "s__Intestinimonas sp900540545",
                "ani": 79.7854,
                "matched_fragments": 357,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117605.1",
                "gtdb_species": "s__Intestinimonas stercoravium",
                "ani": 79.5897,
                "matched_fragments": 298,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900543935.1",
                "gtdb_species": "s__Marseille-P3106 sp900543935",
                "ani": 79.4287,
                "matched_fragments": 304,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Marseille-P3106",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014287675.1",
                "gtdb_species": "s__Pseudoflavonifractor sp014287675",
                "ani": 79.3297,
                "matched_fragments": 394,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCA_900550585.1",
                "gtdb_species": "s__CAG-83 sp900550585",
                "ani": 78.6382,
                "matched_fragments": 139,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905205085.1",
                "gtdb_species": "s__Lawsonibacter sp900766145",
                "ani": 78.5117,
                "matched_fragments": 194,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910587875.1",
                "gtdb_species": "s__Dysosmobacter sp910587875",
                "ani": 77.1655,
                "matched_fragments": 172,
                "total_fragments": 1117,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lawsonibacter",
        "hominis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}