{
    "type": "genome",
    "identifier": "GCF_014288065.1",
    "organism": "Ruminococcus intestinalis",
    "title": "Ruminococcus intestinalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014288065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15808720",
        "wgs_master": "JACOPS000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2763066",
        "species_taxid": "2763066",
        "organism_name": "Ruminococcus intestinalis",
        "infraspecific_name": "strain=NSJ-71",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/24",
        "asm_name": "ASM1428806v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_014288065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/288/065/GCF_014288065.1_ASM1428806v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2436182",
        "genome_size_ungapped": "2436182",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014288065.1-RS_2024_07_15",
        "annotation_date": "2024-07-15",
        "total_gene_count": "2407",
        "protein_coding_gene_count": "2316",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-24",
    "dateModified": "2020-08-24",
    "datePublished": "2020-08-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ruminococcus intestinalis"
        ],
        "sample_taxid": [
            "2763066"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.677 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2436182",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "864111",
        "N50 (bp)": "524443",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "2317",
        "Average Protein Length": "300.4",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Ruminococcus bromii",
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                "accession": "GCA_002834225.1",
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                "species_taxid": 40518,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminococcus bovis",
                "strain": "strain=JE7A12",
                "accession": "GCA_005601135.1",
                "taxid": 2564099,
                "species_taxid": 2564099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9901,
                "matched_fragments": 99,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "status": "conclusive"
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900755995.1",
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                "matched_fragments": 390,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002834235.1",
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                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 74,
                "status": "-"
            },
            {
                "accession": "GCA_902771755.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002493635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "min_intra_species_ani": "97.46",
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                "status": "-"
            },
            {
                "accession": "GCA_902766775.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003521625.1",
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            {
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            {
                "accession": "GCA_902766885.1",
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            },
            {
                "accession": "GCA_900543095.1",
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                "matched_fragments": 159,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 3334855.36,
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        "coding_genes": 2772.666,
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        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "facultative_respiration": 0.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "intestinalis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}