{ "type": "genome", "identifier": "GCF_014290175.1", "organism": "Anaerosacchariphilus hominis", "title": "Anaerosacchariphilus hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014290175.1", "bioproject": "PRJNA224116", "biosample": "SAMN15807351", "wgs_master": "JACOOR000000000.1", "refseq_category": "reference genome", "taxid": "2763017", "species_taxid": "2763017", "organism_name": "Anaerosacchariphilus hominis", "infraspecific_name": "strain=NSJ-68", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/24", "asm_name": "ASM1429017v1", "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "gbrs_paired_asm": "GCA_014290175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/290/175/GCF_014290175.1_ASM1429017v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3299248", "genome_size_ungapped": "3299248", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014290175.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3269", "protein_coding_gene_count": "3129", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-24", "dateModified": "2020-08-24", "datePublished": "2020-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerosacchariphilus hominis" ], "sample_taxid": [ "2763017" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3299248", "Number of Sequences": "32", "Longest Sequences (bp)": "545270", "N50 (bp)": "435241", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.4", "Number of CDSs": "3210", "Average Protein Length": "308.2", "Coding Ratio (%)": "90.0", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_025148125.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 82.4683, "matched_fragments": 123, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_000484655.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3544, "matched_fragments": 113, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 81.8827, "matched_fragments": 84, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 79.4643, "matched_fragments": 101, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.2976, "matched_fragments": 104, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 79.1929, "matched_fragments": 106, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.0286, "matched_fragments": 105, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.0286, "matched_fragments": 105, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilistercora timonensis", "strain": "strain=Marseille-P3756", "accession": "GCA_900312975.1", "taxid": 2086584, "species_taxid": 2086584, "relation_to_type": "type", "validated": true, "ani": 78.9417, "matched_fragments": 114, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster modestus", "strain": "strain=ASD4241", "accession": "GCA_019042245.1", "taxid": 2850322, "species_taxid": 2850322, "relation_to_type": "type", "validated": true, "ani": 78.3348, "matched_fragments": 77, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", "strain": "strain=DSM 14469", "accession": "GCA_000173815.1", "taxid": 168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 78.2299, "matched_fragments": 108, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", "strain": "strain=I-52", "accession": "GCA_900102475.1", "taxid": 168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 78.2081, "matched_fragments": 106, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", "strain": "strain=DSM 14469", "accession": "GCA_025148285.1", "taxid": 168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 78.1897, "matched_fragments": 109, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 77.7815, "matched_fragments": 93, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wansuia hejianensis", "strain": "strain=NSJ-29", "accession": "GCA_014337215.1", "taxid": 2763667, "species_taxid": 2763667, "relation_to_type": "type", "validated": true, "ani": 77.3915, "matched_fragments": 65, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2177, "matched_fragments": 80, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2124, "matched_fragments": 79, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_025151995.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 76.9421, "matched_fragments": 53, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_000425525.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 76.7263, "matched_fragments": 52, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cuneatibacter caecimuris", "strain": "strain=DSM 29486", "accession": "GCA_004216775.1", "taxid": 1796618, "species_taxid": 1796618, "relation_to_type": "type", "validated": true, "ani": 76.2576, "matched_fragments": 51, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014290175.1", "gtdb_species": "s__Merdisoma sp014290175", "ani": 100.0, "matched_fragments": 1084, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.62", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_902362725.1", "gtdb_species": "s__Merdisoma sp900066385", "ani": 86.9795, "matched_fragments": 676, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900553635.1", "gtdb_species": "s__Merdisoma sp900553635", "ani": 85.7336, "matched_fragments": 439, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.78", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002160825.1", "gtdb_species": "s__Merdisoma sp002160825", "ani": 79.1148, "matched_fragments": 343, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002160765.1", "gtdb_species": "s__Merdisoma faecalis", "ani": 78.9875, "matched_fragments": 357, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_910574835.1", "gtdb_species": "s__Merdisoma sp910574835", "ani": 78.5774, "matched_fragments": 198, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009917555.1", "gtdb_species": "s__Merdisoma sp009917555", "ani": 78.552, "matched_fragments": 255, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018715645.1", "gtdb_species": "s__Merdisoma merdipullorum", "ani": 78.4651, "matched_fragments": 270, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910574255.1", "gtdb_species": "s__Merdisoma sp910574255", "ani": 78.0981, "matched_fragments": 209, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910575725.1", "gtdb_species": "s__Merdisoma sp011959465", "ani": 77.871, "matched_fragments": 253, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014385265.1", "gtdb_species": "s__Copromonas sp000435795", "ani": 77.8416, "matched_fragments": 103, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Copromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "96.73", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_910586955.1", "gtdb_species": "s__Merdisoma sp910586955", "ani": 77.3464, "matched_fragments": 206, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018711815.1", "gtdb_species": "s__Egerieimonas intestinavium", "ani": 76.9466, "matched_fragments": 119, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Egerieimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900549235.1", "gtdb_species": "s__Enterocloster sp900549235", "ani": 76.7615, "matched_fragments": 92, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905215775.1", "gtdb_species": "s__Copromonas sp905215775", "ani": 76.3135, "matched_fragments": 84, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Copromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Anaerosacchariphilus", "hominis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }