{ "type": "genome", "identifier": "GCF_014295035.1", "organism": "Streptomyces buecherae", "title": "Streptomyces buecherae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014295035.1", "bioproject": "PRJNA224116", "biosample": "SAMN15800794", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2763006", "species_taxid": "2763006", "organism_name": "Streptomyces buecherae", "infraspecific_name": "strain=AC541", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/25", "asm_name": "ASM1429503v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_014295035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/295/035/GCF_014295035.1_ASM1429503v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8416829", "genome_size_ungapped": "8416829", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014295035.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6708", "protein_coding_gene_count": "6462", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-25", "dateModified": "2020-08-25", "datePublished": "2020-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces buecherae" ], "sample_taxid": [ "2763006" ], "sample_host_organism": [ "Myotis velifer" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Carlsbad Caverns National Park" ], "sample_host_location_id": [], "data_size": "2.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8416829", "Number of Sequences": "1", "Longest Sequences (bp)": "8416829", "N50 (bp)": "8416829", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "6895", "Average Protein Length": "343.4", "Coding Ratio (%)": "84.4", "Number of rRNAs": "18", "Number of tRNAs": "96", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces buecherae", "strain": "strain=AC541", "accession": "GCA_014295035.1", "taxid": 2763006, "species_taxid": 2763006, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2804, 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"below_threshold" }, { "organism_name": "Streptomyces chrestomyceticus", "strain": "strain=NBRC 13444", "accession": "GCA_003865135.1", "taxid": 68185, "species_taxid": 68185, "relation_to_type": "type", "validated": true, "ani": 81.2211, "matched_fragments": 1446, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces netropsis", "strain": "strain=CECT 3265", "accession": "GCA_014203545.1", "taxid": 55404, "species_taxid": 55404, "relation_to_type": "type", "validated": true, "ani": 81.2048, "matched_fragments": 1327, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 81.202, "matched_fragments": 1423, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces antimycoticus", "strain": "strain=NBRC 12839", "accession": "GCA_005405925.1", "taxid": 68175, "species_taxid": 68175, "relation_to_type": "type", "validated": true, "ani": 81.1953, "matched_fragments": 1490, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=NRRL ISP-5260", "accession": "GCA_000717285.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 81.1616, "matched_fragments": 1393, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albofaciens", "strain": "strain=ATCC 23873", "accession": "GCA_008634025.1", "taxid": 66866, "species_taxid": 66866, "relation_to_type": "type", "validated": true, "ani": 81.1388, "matched_fragments": 1446, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mashuensis", "strain": "strain=JCM 4059", "accession": "GCA_014654785.1", "taxid": 33904, "species_taxid": 33904, "relation_to_type": "type", "validated": true, "ani": 81.097, "matched_fragments": 1246, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 81.0828, "matched_fragments": 1032, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albospinus", "strain": "strain=JCM 3399", "accession": "GCA_014648695.1", "taxid": 285515, "species_taxid": 285515, "relation_to_type": "type", "validated": true, "ani": 81.0015, "matched_fragments": 1239, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_017916255.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 80.7974, "matched_fragments": 1318, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_000342125.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 80.792, "matched_fragments": 1236, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces huiliensis", "strain": "strain=SCA2-4", "accession": "GCA_020037025.1", "taxid": 2876027, "species_taxid": 2876027, "relation_to_type": "type", "validated": true, "ani": 80.7414, "matched_fragments": 1194, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 80.7329, "matched_fragments": 1190, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces melanogenes", "strain": "strain=JCM 4398", "accession": "GCA_014649795.1", "taxid": 67326, "species_taxid": 67326, "relation_to_type": "type", "validated": true, "ani": 80.658, "matched_fragments": 1292, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=NBRC 12920", "accession": "GCA_020521295.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 80.6479, "matched_fragments": 1217, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 80.5014, "matched_fragments": 1182, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durbertensis", "strain": "strain=DSM 104538", "accession": "GCA_014156695.1", "taxid": 2448886, "species_taxid": 2448886, "relation_to_type": "type", "validated": true, "ani": 80.3309, "matched_fragments": 872, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durmitorensis", "strain": "strain=MS405", "accession": "GCA_023498005.1", "taxid": 319947, "species_taxid": 319947, "relation_to_type": "type", "validated": true, "ani": 80.3079, "matched_fragments": 1299, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 80.2827, "matched_fragments": 1208, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 80.1689, "matched_fragments": 1290, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila glaucinigra", "strain": "strain=CGMCC 4.1858", "accession": "GCA_900188405.1", "taxid": 235986, "species_taxid": 235986, "relation_to_type": "type", "validated": true, "ani": 80.0479, "matched_fragments": 1226, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces goshikiensis", "strain": "strain=JCM 4640", "accession": "GCA_014650555.1", "taxid": 1942, "species_taxid": 1942, "relation_to_type": "type", "validated": true, "ani": 79.9293, "matched_fragments": 1254, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneus", "strain": "strain=CGMCC 4.1671", "accession": "GCA_004028635.1", "taxid": 1904, "species_taxid": 1904, "relation_to_type": "type", "validated": true, "ani": 79.8391, "matched_fragments": 1221, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 79.8368, "matched_fragments": 1093, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 79.822, "matched_fragments": 1240, "total_fragments": 2805, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014295035.1", "gtdb_species": "s__Streptomyces buecherae", "ani": 100.0, "matched_fragments": 2804, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCA_018114805.1", "gtdb_species": "s__Streptomyces philanthi", "ani": 93.8466, "matched_fragments": 2153, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001417735.1", "gtdb_species": "s__Streptomyces sp001417735", "ani": 81.4903, "matched_fragments": 1349, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016031615.1", "gtdb_species": "s__Streptomyces pactum", "ani": 81.4421, "matched_fragments": 1519, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876625.1", "gtdb_species": "s__Streptomyces syringium", "ani": 81.3952, "matched_fragments": 1298, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014203545.1", "gtdb_species": "s__Streptomyces netropsis", "ani": 81.1838, "matched_fragments": 1330, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 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"gtdb_species": "s__Streptomyces sp009769735", "ani": 80.2617, "matched_fragments": 1285, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002941025.1", "gtdb_species": "s__Streptomyces sp002941025", "ani": 80.1863, "matched_fragments": 1201, "total_fragments": 2805, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646115.1", "gtdb_species": "s__Streptomyces 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