{ "type": "genome", "identifier": "GCF_014295415.1", "organism": "Constantimarinum furrinae", "title": "Constantimarinum furrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pukyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014295415.1", "bioproject": "PRJNA224116", "biosample": "SAMN11269519", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2562285", "species_taxid": "2562285", "organism_name": "Constantimarinum furrinae", "infraspecific_name": "strain=ALE3EI", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/25", "asm_name": "ASM1429541v1", "asm_submitter": "Pukyong National University", "gbrs_paired_asm": "GCA_014295415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/295/415/GCF_014295415.1_ASM1429541v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2987299", "genome_size_ungapped": "2987299", "gc_percent": "40.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014295415.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2738", "protein_coding_gene_count": "2687", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-25", "dateModified": "2020-08-25", "datePublished": "2020-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Constantimarinum furrinae" ], "sample_taxid": [ "2562285" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "0.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2987299", "Number of Sequences": "1", "Longest Sequences (bp)": "2987299", "N50 (bp)": "2987299", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "2671", "Average Protein Length": "340.8", "Coding Ratio (%)": "91.4", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 994, "total_fragments": 995, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 78.0258, "matched_fragments": 225, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.9988, "matched_fragments": 53, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 77.8137, "matched_fragments": 139, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 77.6785, "matched_fragments": 130, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 77.597, "matched_fragments": 135, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pukyongia salina", "strain": "strain=RR4-38", "accession": "GCA_002966125.1", "taxid": 2094025, "species_taxid": 2094025, "relation_to_type": "type", "validated": true, "ani": 77.4663, "matched_fragments": 178, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=CGMCC 1.11023", "accession": "GCA_900106795.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 77.3645, "matched_fragments": 70, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas ophiurae", "strain": "strain=KMM 3046", "accession": "GCA_003413745.1", "taxid": 387659, "species_taxid": 387659, "relation_to_type": "type", "validated": true, "ani": 77.351, "matched_fragments": 116, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 77.2339, "matched_fragments": 169, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=DSM 26349", "accession": "GCA_900141955.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 77.1668, "matched_fragments": 71, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 77.1123, "matched_fragments": 87, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 77.0574, "matched_fragments": 50, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas spongiae", "strain": "strain=HN-E44", "accession": "GCA_003095375.1", "taxid": 2174845, "species_taxid": 2174845, "relation_to_type": "type", "validated": true, "ani": 77.0032, "matched_fragments": 99, "total_fragments": 995, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014295415.1", "gtdb_species": "s__Altibacter sp014295415", "ani": 100.0, "matched_fragments": 994, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002813135.1", "gtdb_species": "s__Altibacter sp002813135", "ani": 78.2834, "matched_fragments": 218, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000746845.1", "gtdb_species": "s__Altibacter lentus", "ani": 78.0334, "matched_fragments": 226, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001637325.1", "gtdb_species": "s__Cochleicola gelatinilyticus", "ani": 77.8137, "matched_fragments": 139, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cochleicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102055.1", "gtdb_species": "s__Ulvibacter litoralis", "ani": 77.6785, "matched_fragments": 130, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ulvibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002696485.1", "gtdb_species": "s__Altibacter sp002696485", "ani": 77.5751, "matched_fragments": 167, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003413745.1", "gtdb_species": "s__Marixanthomonas ophiurae", "ani": 77.351, "matched_fragments": 116, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_008501705.1", "gtdb_species": "s__Pukyongia sp008501705", "ani": 77.2524, "matched_fragments": 164, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pukyongia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003688405.1", "gtdb_species": "s__Ulvibacter antarcticus", "ani": 77.2488, "matched_fragments": 168, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ulvibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002631855.1", "gtdb_species": "s__Marixanthomonas sp002631855", "ani": 77.2347, "matched_fragments": 132, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006346335.1", "gtdb_species": "s__Aequorivita sinensis", "ani": 77.1123, "matched_fragments": 87, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003095375.1", "gtdb_species": "s__Marixanthomonas sp003095375", "ani": 77.0032, "matched_fragments": 99, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002337605.1", "gtdb_species": "s__Marinirhabdus sp002337605", "ani": 76.9983, "matched_fragments": 137, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marinirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002715485.1", "gtdb_species": "s__Aequorivita sp002715485", "ani": 76.9845, "matched_fragments": 99, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905479745.1", "gtdb_species": "s__Pukyongia sp905479745", "ani": 76.9681, "matched_fragments": 143, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pukyongia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016649715.1", "gtdb_species": "s__Aequorivita sp016649715", "ani": 76.7221, "matched_fragments": 89, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016827595.1", "gtdb_species": "s__Marixanthomonas sp016827595", "ani": 76.623, "matched_fragments": 92, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009901575.1", "gtdb_species": "s__Leptobacterium sp009901575", "ani": 76.6111, "matched_fragments": 56, "total_fragments": 995, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Leptobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Constantimarinum", "furrinae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }