{ "type": "genome", "identifier": "GCF_014305155.1", "organism": "Flavobacterium muglaense", "title": "Flavobacterium muglaense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Erciyes University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014305155.1", "bioproject": "PRJNA224116", "biosample": "SAMN15857145", "wgs_master": "JACRUK000000000.1", "refseq_category": "reference genome", "taxid": "2764716", "species_taxid": "2764716", "organism_name": "Flavobacterium muglaense", "infraspecific_name": "strain=F-60", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/26", "asm_name": "ASM1430515v1", "asm_submitter": "Erciyes University", "gbrs_paired_asm": "GCA_014305155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/305/155/GCF_014305155.1_ASM1430515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4155704", "genome_size_ungapped": "4154857", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "118", "contig_count": "118", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014305155.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3633", "protein_coding_gene_count": "3535", "non_coding_gene_count": "54", "pubmed_id": "34296991" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-26", "dateModified": "2020-08-26", "datePublished": "2020-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium muglaense" ], "sample_taxid": [ "2764716" ], "sample_host_organism": [ "Oncorhynchus mykiss" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey:Mugla" ], "sample_host_location_id": [], "data_size": "1.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4155704", "Number of Sequences": "118", "Longest Sequences (bp)": "249380", "N50 (bp)": "67907", "Gap Ratio (%)": "0.020382", "GCcontent (%)": "34.5", "Number of CDSs": "3570", "Average Protein Length": "337.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1321, "total_fragments": 1324, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 82.2563, "matched_fragments": 578, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium kayseriense", "strain": "strain=F-47", "accession": "GCA_014305095.1", "taxid": 2764714, "species_taxid": 2764714, "relation_to_type": "type", "validated": true, "ani": 80.9293, "matched_fragments": 523, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 80.2552, "matched_fragments": 610, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gillisiae", "strain": "strain=DSM 22376", "accession": "GCA_900107635.1", "taxid": 150146, "species_taxid": 150146, "relation_to_type": "type", "validated": true, "ani": 80.2136, "matched_fragments": 618, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 79.9718, "matched_fragments": 523, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crassostreae", "strain": "strain=LPB0076", "accession": "GCA_001831475.1", "taxid": 1763534, "species_taxid": 1763534, "relation_to_type": "type", "validated": true, "ani": 79.9598, "matched_fragments": 417, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 79.6857, "matched_fragments": 413, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 79.4263, "matched_fragments": 452, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.3136, "matched_fragments": 497, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 79.2192, "matched_fragments": 413, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.1355, "matched_fragments": 472, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 79.1148, "matched_fragments": 440, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 79.058, "matched_fragments": 437, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 78.9887, "matched_fragments": 429, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.5676, "matched_fragments": 424, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 77.8285, "matched_fragments": 256, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.5699, "matched_fragments": 161, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.3896, "matched_fragments": 191, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014305155.1", "gtdb_species": "s__Flavobacterium sp014305155", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "muglaense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }