{
    "type": "genome",
    "identifier": "GCF_014306095.1",
    "organism": "Lentihominibacter faecis",
    "title": "Lentihominibacter faecis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014306095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15805282",
        "wgs_master": "JACRWC000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2764712",
        "species_taxid": "2764712",
        "organism_name": "Lentihominibacter faecis",
        "infraspecific_name": "strain=BX16",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/26",
        "asm_name": "ASM1430609v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_014306095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/306/095/GCF_014306095.1_ASM1430609v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2097162",
        "genome_size_ungapped": "2097162",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "119",
        "contig_count": "119",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014306095.1-RS_2024_05_21",
        "annotation_date": "2024-05-21",
        "total_gene_count": "2027",
        "protein_coding_gene_count": "1931",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-26",
    "dateModified": "2020-08-26",
    "datePublished": "2020-08-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lentihominibacter faecis"
        ],
        "sample_taxid": [
            "2764712"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.599 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.56,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2097162",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "65005",
        "N50 (bp)": "23786",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "1895",
        "Average Protein Length": "313.2",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lentihominibacter faecis",
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                "accession": "GCA_014306095.1",
                "taxid": 2764712,
                "species_taxid": 2764712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 634,
                "total_fragments": 640,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Zhenpiania hominis",
                "strain": "strain=BX12",
                "accession": "GCA_014333425.1",
                "taxid": 2763644,
                "species_taxid": 2763644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8908,
                "matched_fragments": 67,
                "total_fragments": 640,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentihominibacter hominis",
                "strain": "strain=NSJ-24",
                "accession": "GCA_014385065.1",
                "taxid": 2763645,
                "species_taxid": 2763645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.542,
                "matched_fragments": 70,
                "total_fragments": 640,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014306095.1",
                "gtdb_species": "s__Copromorpha sp900549125",
                "ani": 100.0,
                "matched_fragments": 634,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902362435.1",
                "gtdb_species": "s__Copromorpha sp900066305",
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                "matched_fragments": 124,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017416795.1",
                "gtdb_species": "s__Copromorpha sp017416795",
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                "matched_fragments": 82,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.76",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900542385.1",
                "gtdb_species": "s__Copromorpha excrementavium",
                "ani": 77.797,
                "matched_fragments": 75,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905193765.1",
                "gtdb_species": "s__Copromorpha sp905193765",
                "ani": 77.6245,
                "matched_fragments": 67,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014385065.1",
                "gtdb_species": "s__Copromorpha sp900545775",
                "ani": 77.542,
                "matched_fragments": 70,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900543485.1",
                "gtdb_species": "s__Copromorpha excrementipullorum",
                "ani": 77.3395,
                "matched_fragments": 73,
                "total_fragments": 640,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Copromorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lentihominibacter",
        "faecis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}