{ "type": "genome", "identifier": "GCF_014306105.1", "organism": "Pontibacter cellulosilyticus", "title": "Pontibacter cellulosilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014306105.1", "bioproject": "PRJNA224116", "biosample": "SAMN15835294", "wgs_master": "JACRVF000000000.1", "refseq_category": "reference genome", "taxid": "1720253", "species_taxid": "1720253", "organism_name": "Pontibacter cellulosilyticus", "infraspecific_name": "strain=SD6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/26", "asm_name": "ASM1430610v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_014306105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/306/105/GCF_014306105.1_ASM1430610v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4613245", "genome_size_ungapped": "4612953", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014306105.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4003", "protein_coding_gene_count": "3938", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-26", "dateModified": "2020-08-26", "datePublished": "2020-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter cellulosilyticus" ], "sample_taxid": [ "1720253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Ulleung Island" ], "sample_host_location_id": [], "data_size": "1.314 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4613245", "Number of Sequences": "13", "Longest Sequences (bp)": "1763182", "N50 (bp)": "725051", "Gap Ratio (%)": "0.006330", "GCcontent (%)": "45.4", "Number of CDSs": "3917", "Average Protein Length": "338.5", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibacter cellulosilyticus", "strain": "strain=SD6", "accession": "GCA_014306105.1", "taxid": 1720253, "species_taxid": 1720253, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1530, "total_fragments": 1532, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", "accession": "GCA_023630255.1", "taxid": 1343896, "species_taxid": 1343896, "relation_to_type": "type", "validated": true, "ani": 78.8691, "matched_fragments": 462, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mangrovi", "strain": "strain=HB172049", "accession": "GCA_006385705.1", "taxid": 2589816, "species_taxid": 2589816, "relation_to_type": "type", "validated": true, "ani": 78.7104, "matched_fragments": 486, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 78.6332, "matched_fragments": 482, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter fetidus", "strain": "strain=BT213", "accession": "GCA_010119545.1", "taxid": 2700082, "species_taxid": 2700082, "relation_to_type": "type", "validated": true, "ani": 78.5118, "matched_fragments": 461, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mucosus", "strain": "strain=DSM 100162", "accession": "GCA_003054055.1", "taxid": 1649266, "species_taxid": 1649266, "relation_to_type": "type", "validated": true, "ani": 78.3896, "matched_fragments": 464, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter flavimaris", "strain": "strain=S10-8", "accession": "GCA_001907195.1", "taxid": 1797110, "species_taxid": 1797110, "relation_to_type": "type", "validated": true, "ani": 78.3626, "matched_fragments": 457, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter burrus", "strain": "strain=BT327", "accession": "GCA_010686685.1", "taxid": 2704466, "species_taxid": 2704466, "relation_to_type": "type", "validated": true, "ani": 78.2737, "matched_fragments": 411, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter korlensis", "strain": "strain=X14-1T", "accession": "GCA_000973725.1", "taxid": 400092, "species_taxid": 400092, "relation_to_type": "type", "validated": true, "ani": 78.2518, "matched_fragments": 433, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 78.2295, "matched_fragments": 478, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_000472485.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 78.221, "matched_fragments": 478, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_003585765.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 78.2173, "matched_fragments": 479, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter arcticus", "strain": "strain=2b14", "accession": "GCA_003284895.1", "taxid": 2080288, "species_taxid": 2080288, "relation_to_type": "type", "validated": true, "ani": 78.155, "matched_fragments": 357, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_900188175.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 78.128, "matched_fragments": 373, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter oryzae", "strain": "strain=KIRAN", "accession": "GCA_003576375.1", "taxid": 2304593, "species_taxid": 2304593, "relation_to_type": "type", "validated": true, "ani": 78.1142, "matched_fragments": 458, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_003002015.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 78.0932, "matched_fragments": 371, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter virosus", "strain": "strain=DSM 100231", "accession": "GCA_003096355.1", "taxid": 1765052, "species_taxid": 1765052, "relation_to_type": "type", "validated": true, "ani": 77.9345, "matched_fragments": 352, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 77.8415, "matched_fragments": 327, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter silvestris", "strain": "strain=XAAS-R86T", "accession": "GCA_020907275.1", "taxid": 2305183, "species_taxid": 2305183, "relation_to_type": "type", "validated": true, "ani": 77.5989, "matched_fragments": 250, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014306105.1", "gtdb_species": "s__Pontibacter sp014306105", "ani": 100.0, "matched_fragments": 1530, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014297265.1", "gtdb_species": "s__Pontibacter sp014297265", "ani": 78.9797, "matched_fragments": 443, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212495.1", "gtdb_species": "s__Pontibacter sp014212495", "ani": 78.9007, "matched_fragments": 454, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018122615.1", "gtdb_species": "s__Pontibacter sp018122615", "ani": 78.7654, "matched_fragments": 431, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006385705.1", "gtdb_species": "s__Pontibacter sp006385705", "ani": 78.7235, "matched_fragments": 485, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010119545.1", "gtdb_species": "s__Pontibacter fetidus", "ani": 78.5252, "matched_fragments": 460, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003054055.1", "gtdb_species": "s__Pontibacter mucosus", "ani": 78.3682, "matched_fragments": 466, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001907195.1", "gtdb_species": "s__Pontibacter sp001907195", "ani": 78.3598, "matched_fragments": 458, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010686685.1", "gtdb_species": "s__Pontibacter burrus", "ani": 78.2548, "matched_fragments": 413, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000973725.1", "gtdb_species": "s__Pontibacter korlensis", "ani": 78.2518, "matched_fragments": 433, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113285.1", "gtdb_species": "s__Pontibacter chinhatensis", "ani": 78.2463, "matched_fragments": 475, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003585765.1", "gtdb_species": "s__Pontibacter actiniarum", "ani": 78.2126, "matched_fragments": 478, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015686655.1", "gtdb_species": "s__Pontibacter sp015686655", "ani": 78.1731, "matched_fragments": 360, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188175.1", "gtdb_species": "s__Pontibacter ummariensis", "ani": 78.148, "matched_fragments": 371, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003576375.1", "gtdb_species": "s__Pontibacter oryzae", "ani": 78.1301, "matched_fragments": 456, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003096355.1", "gtdb_species": "s__Pontibacter virosus", "ani": 77.9077, "matched_fragments": 355, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.236, "cell_length": 0.229, "doubling_h": null, "growth_tmp": 28.5, "optimum_tmp": 29.924, "optimum_ph": 7.3, "genome_size": 4957048.166, "gc_content": 51.009, "coding_genes": 4209.666, "rRNA16S_genes": 4.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.363, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pontibacter", "cellulosilyticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }