{ "type": "genome", "identifier": "GCF_014322765.1", "organism": "Listeria immobilis", "title": "Listeria immobilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014322765.1", "bioproject": "PRJNA224116", "biosample": "SAMN14390327", "wgs_master": "JAASTZ000000000.1", "refseq_category": "na", "taxid": "2713502", "species_taxid": "2713502", "organism_name": "Listeria immobilis", "infraspecific_name": "strain=FSL L7-1519", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/27", "asm_name": "ASM1432276v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_014322765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/322/765/GCF_014322765.1_ASM1432276v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3063968", "genome_size_ungapped": "3063968", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014322765.1-RS_2024_10_12", "annotation_date": "2024-10-12", "total_gene_count": "3137", "protein_coding_gene_count": "3010", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-27", "dateModified": "2020-08-27", "datePublished": "2020-08-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria immobilis" ], "sample_taxid": [ "2713502" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:WY" ], "sample_host_location_id": [], "data_size": "0.864 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3063968", "Number of Sequences": "43", "Longest Sequences (bp)": "256111", "N50 (bp)": "156931", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "3063", "Average Protein Length": "292.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Listeria immobilis", "strain": "strain=FSL L7-1519", "accession": "GCA_014322765.1", "taxid": 2713502, "species_taxid": 2713502, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1000, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria ivanovii subsp. ivanovii", "strain": "strain=PAM 55", "accession": "GCA_000252975.1", "taxid": 202751, "species_taxid": 1638, "relation_to_type": "claderef", "validated": true, "ani": 86.8399, "matched_fragments": 741, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria ivanovii subsp. ivanovii", "strain": "strain=NCTC11846", "accession": "GCA_900187025.1", "taxid": 202751, "species_taxid": 1638, "relation_to_type": "type", "validated": true, "ani": 86.8043, "matched_fragments": 754, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria ivanovii subsp. ivanovii", "strain": "strain=NCTC11007", "accession": "GCA_900187195.1", "taxid": 202751, "species_taxid": 1638, "relation_to_type": "type", "validated": true, "ani": 86.7884, "matched_fragments": 755, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria 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