{ "type": "genome", "identifier": "GCF_014323725.1", "organism": "Actinokineospora xionganensis", "title": "Actinokineospora xionganensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hebei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014323725.1", "bioproject": "PRJNA224116", "biosample": "SAMN13545375", "wgs_master": "JABVED000000000.1", "refseq_category": "reference genome", "taxid": "2684470", "species_taxid": "2684470", "organism_name": "Actinokineospora xionganensis", "infraspecific_name": "strain=HBU206404", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/28", "asm_name": "ASM1432372v1", "asm_submitter": "Hebei University", "gbrs_paired_asm": "GCA_014323725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/323/725/GCF_014323725.1_ASM1432372v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6813329", "genome_size_ungapped": "6813329", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014323725.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "6451", "protein_coding_gene_count": "6294", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-28", "dateModified": "2020-08-28", "datePublished": "2020-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinokineospora xionganensis" ], "sample_taxid": [ "2684470" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xiongan" ], "sample_host_location_id": [], "data_size": "1.846 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6813329", "Number of Sequences": "70", "Longest Sequences (bp)": "752937", "N50 (bp)": "325226", "Gap Ratio (%)": "0.000396", "GCcontent (%)": "69.6", "Number of CDSs": "6410", "Average Protein Length": "321.2", "Coding Ratio (%)": "90.7", "Number of rRNAs": "2", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinokineospora xionganensis", "strain": "strain=HBU206404", "accession": "GCA_014323725.1", "taxid": 2684470, "species_taxid": 2684470, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2240, "total_fragments": 2242, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinokineospora alba", "strain": "strain=DSM 45114", "accession": "GCA_004362515.1", "taxid": 504798, "species_taxid": 504798, "relation_to_type": "type", "validated": true, "ani": 92.2037, "matched_fragments": 1822, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora iranica", "strain": "strain=IBRC-M 10403", "accession": "GCA_900101685.1", "taxid": 1271860, "species_taxid": 1271860, "relation_to_type": "type", "validated": true, "ani": 81.9413, "matched_fragments": 1102, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 81.1759, "matched_fragments": 1103, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora terrae", "strain": "strain=DSM 44260", "accession": "GCA_900111175.1", "taxid": 155974, "species_taxid": 155974, "relation_to_type": "type", "validated": true, "ani": 81.094, "matched_fragments": 1053, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora pegani", "strain": "strain=TRM 65233", "accession": "GCA_009745975.1", "taxid": 2654637, "species_taxid": 2654637, "relation_to_type": "type", "validated": true, "ani": 81.0568, "matched_fragments": 1005, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 81.0176, "matched_fragments": 1063, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 80.9963, "matched_fragments": 1129, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 80.9707, "matched_fragments": 1049, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 80.9243, "matched_fragments": 1050, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora auranticolor", "strain": "strain=YU 961-1", "accession": "GCA_002934265.1", "taxid": 155976, "species_taxid": 155976, "relation_to_type": "type", "validated": true, "ani": 80.8875, "matched_fragments": 1109, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 80.6236, "matched_fragments": 1028, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea tibetensis", "strain": "strain=FXJ1.1311", "accession": "GCA_007845675.1", "taxid": 2591470, "species_taxid": 2591470, "relation_to_type": "type", "validated": true, "ani": 78.8376, "matched_fragments": 852, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola xanthii", "strain": "strain=11-183", "accession": "GCA_001921205.1", "taxid": 1912961, "species_taxid": 1912961, "relation_to_type": "type", "validated": true, "ani": 78.8209, "matched_fragments": 856, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea californiensis", "strain": "strain=DSM 43393", "accession": "GCA_024648825.1", "taxid": 438851, "species_taxid": 438851, "relation_to_type": "type", "validated": true, "ani": 78.6635, "matched_fragments": 824, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 78.4914, "matched_fragments": 764, "total_fragments": 2242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", 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