{ "tc_result": [ { "organism_name": "Novosphingopyxis iocasae", "strain": "strain=PB63", "accession": "GCA_014334095.1", "taxid": 2762729, "species_taxid": 2762729, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1063, "total_fragments": 1063, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingopyxis baekryungensis", "strain": "strain=DSM 16222", "accession": "GCA_000420305.1", "taxid": 279369, "species_taxid": 279369, "relation_to_type": "type", "validated": true, "ani": 81.9678, "matched_fragments": 642, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 78.6233, "matched_fragments": 211, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.5551, "matched_fragments": 250, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas fennica", "strain": "strain=K101", "accession": "GCA_003034225.1", "taxid": 114404, "species_taxid": 114404, "relation_to_type": "type", "validated": true, "ani": 77.846, "matched_fragments": 303, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas trueperi", "strain": "strain=DSM 7225", "accession": "GCA_011927635.1", "taxid": 53317, "species_taxid": 53317, "relation_to_type": "type", "validated": true, "ani": 77.8337, "matched_fragments": 291, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.7665, "matched_fragments": 251, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 77.6937, "matched_fragments": 258, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 77.6747, "matched_fragments": 283, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium scionense", "strain": "strain=DSM 19371", "accession": "GCA_014197035.1", "taxid": 1404341, "species_taxid": 1404341, "relation_to_type": "type", "validated": true, "ani": 77.6402, "matched_fragments": 296, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=DSM 16792", "accession": "GCA_014196135.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 77.5616, "matched_fragments": 232, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=CP1D", "accession": "GCA_004135605.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 77.5509, "matched_fragments": 232, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus dicambivorans", "strain": "strain=Ndbn-20", "accession": "GCA_002355275.1", "taxid": 1850238, "species_taxid": 1850238, "relation_to_type": "type", "validated": true, "ani": 77.5268, "matched_fragments": 276, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 77.4994, "matched_fragments": 269, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 77.4944, "matched_fragments": 280, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 77.4714, "matched_fragments": 266, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 77.433, "matched_fragments": 294, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania psychrotolerans", "strain": "strain=1XM2-8", "accession": "GCA_019711355.1", "taxid": 2867238, "species_taxid": 2867238, "relation_to_type": "type", "validated": true, "ani": 77.3969, "matched_fragments": 139, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mucosissima", "strain": "strain=DSM 17494", "accession": "GCA_002197665.1", "taxid": 370959, "species_taxid": 370959, "relation_to_type": "type", "validated": true, "ani": 77.3861, "matched_fragments": 199, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, "species_taxid": 1609977, "relation_to_type": "type", "validated": true, "ani": 77.3808, "matched_fragments": 260, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 77.3794, "matched_fragments": 211, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 77.3315, "matched_fragments": 220, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsengisoli An et al. 2013", "strain": "strain=KACC 16858", "accession": "GCA_009363895.1", "taxid": 363835, "species_taxid": 363835, "relation_to_type": "type", "validated": true, "ani": 77.2947, "matched_fragments": 188, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter cryptus", "strain": "strain=DSM 12079", "accession": "GCA_000422985.1", "taxid": 196588, "species_taxid": 196588, "relation_to_type": "type", "validated": true, "ani": 77.2659, "matched_fragments": 221, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 76.9568, "matched_fragments": 251, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014334095.1", "gtdb_species": "s__Novosphingopyxis sp002683755", "ani": 100.0, "matched_fragments": 1062, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000420305.1", "gtdb_species": "s__Novosphingopyxis baekryungensis", "ani": 81.9484, "matched_fragments": 641, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003815535.1", "gtdb_species": "s__Alteraurantiacibacter spongiae", "ani": 79.0903, "matched_fragments": 248, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016745095.1", "gtdb_species": "s__Croceicoccus sp016745095", "ani": 78.343, "matched_fragments": 260, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001555775.1", "gtdb_species": "s__Blastomonas delafieldii_A", "ani": 78.1448, "matched_fragments": 348, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_003201955.1", "gtdb_species": "s__Blastomonas natatoria", "ani": 77.8986, "matched_fragments": 307, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002355855.1", "gtdb_species": "s__Sphingobium cloacae", "ani": 77.8634, "matched_fragments": 265, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003034225.1", "gtdb_species": "s__Sphingomonas_E fennica", "ani": 77.8351, "matched_fragments": 304, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000503195.1", "gtdb_species": "s__Blastomonas sp000503195", "ani": 77.8283, "matched_fragments": 353, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.00", "min_intra_species_ani": "97.00", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900177405.1", "gtdb_species": "s__Allosphingosinicella indica", "ani": 77.6881, "matched_fragments": 260, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Allosphingosinicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003240855.1", "gtdb_species": "s__Sphingomonas_L sanxanigenens_A", "ani": 77.611, "matched_fragments": 259, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006874585.1", "gtdb_species": "s__Novosphingobium sp006874585", "ani": 77.5594, "matched_fragments": 265, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000016765.1", "gtdb_species": "s__Rhizorhabdus wittichii", "ani": 77.5522, "matched_fragments": 292, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004135605.1", "gtdb_species": "s__Sphingomonas desiccabilis", "ani": 77.5376, "matched_fragments": 233, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002355275.1", "gtdb_species": "s__Rhizorhabdus dicambivorans", "ani": 77.511, "matched_fragments": 277, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003050615.1", "gtdb_species": "s__Sphingomonas_H oleivorans", "ani": 77.4721, "matched_fragments": 266, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_H", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009993585.1", "gtdb_species": "s__Sphingorhabdus_C sp009993585", "ani": 77.4529, "matched_fragments": 260, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingorhabdus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000935025.1", "gtdb_species": "s__Sphingomonas hengshuiensis", "ani": 77.391, "matched_fragments": 260, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014230355.1", "gtdb_species": "s__Novosphingobium piscinae", "ani": 77.3315, "matched_fragments": 220, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000422985.1", "gtdb_species": "s__Erythrobacter cryptus", "ani": 77.2659, "matched_fragments": 221, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345855.1", "gtdb_species": "s__Sphingomonas sp004345855", "ani": 77.1338, "matched_fragments": 271, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822125.1", "gtdb_species": "s__Erythrobacter sp013822125", "ani": 77.0187, "matched_fragments": 165, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }