{ "type": "genome", "identifier": "GCF_014334095.1", "organism": "Novosphingopyxis iocasae", "title": "Novosphingopyxis iocasae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese academy of sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014334095.1", "bioproject": "PRJNA224116", "biosample": "SAMN15817294", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2762729", "species_taxid": "2762729", "organism_name": "Novosphingopyxis iocasae", "infraspecific_name": "strain=PB63", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/30", "asm_name": "ASM1433409v1", "asm_submitter": "Institute of Oceanology, Chinese academy of sciences", "gbrs_paired_asm": "GCA_014334095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/334/095/GCF_014334095.1_ASM1433409v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3191507", "genome_size_ungapped": "3191507", "gc_percent": "63.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014334095.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3040", "protein_coding_gene_count": "2964", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-30", "dateModified": "2020-08-30", "datePublished": "2020-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingopyxis iocasae" ], "sample_taxid": [ "2762729" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.887 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3191507", "Number of Sequences": "1", "Longest Sequences (bp)": "3191507", "N50 (bp)": "3191507", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "2994", "Average Protein Length": "322.9", "Coding Ratio (%)": "90.9", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingopyxis iocasae", "strain": "strain=PB63", "accession": "GCA_014334095.1", "taxid": 2762729, "species_taxid": 2762729, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 77.6937, "matched_fragments": 258, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 77.6747, "matched_fragments": 283, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium scionense", "strain": "strain=DSM 19371", "accession": "GCA_014197035.1", "taxid": 1404341, "species_taxid": 1404341, "relation_to_type": "type", "validated": true, "ani": 77.6402, "matched_fragments": 296, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=DSM 16792", "accession": "GCA_014196135.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 77.5616, "matched_fragments": 232, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=CP1D", "accession": "GCA_004135605.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 77.5509, "matched_fragments": 232, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus dicambivorans", "strain": "strain=Ndbn-20", "accession": "GCA_002355275.1", "taxid": 1850238, "species_taxid": 1850238, "relation_to_type": "type", "validated": true, "ani": 77.5268, "matched_fragments": 276, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 77.4994, "matched_fragments": 269, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 77.4944, "matched_fragments": 280, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 77.4714, "matched_fragments": 266, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 77.433, "matched_fragments": 294, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania psychrotolerans", "strain": "strain=1XM2-8", "accession": "GCA_019711355.1", "taxid": 2867238, "species_taxid": 2867238, "relation_to_type": "type", "validated": true, "ani": 77.3969, "matched_fragments": 139, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mucosissima", "strain": "strain=DSM 17494", "accession": "GCA_002197665.1", "taxid": 370959, "species_taxid": 370959, "relation_to_type": "type", "validated": true, "ani": 77.3861, "matched_fragments": 199, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, 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100.0, "matched_fragments": 1062, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000420305.1", "gtdb_species": "s__Novosphingopyxis baekryungensis", "ani": 81.9484, "matched_fragments": 641, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003815535.1", "gtdb_species": "s__Alteraurantiacibacter 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78.1448, "matched_fragments": 348, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_003201955.1", "gtdb_species": "s__Blastomonas natatoria", "ani": 77.8986, "matched_fragments": 307, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002355855.1", "gtdb_species": "s__Sphingobium cloacae", "ani": 77.8634, "matched_fragments": 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