{
    "type": "genome",
    "identifier": "GCF_014335175.1",
    "organism": "Corynebacterium amycolatum",
    "title": "Corynebacterium amycolatum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UPenn",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014335175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07741515",
        "wgs_master": "PDHE00000000.1",
        "refseq_category": "na",
        "taxid": "43765",
        "species_taxid": "43765",
        "organism_name": "Corynebacterium amycolatum",
        "infraspecific_name": "strain=LK23",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/31",
        "asm_name": "LK23",
        "asm_submitter": "UPenn",
        "gbrs_paired_asm": "GCA_014335175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/335/175/GCF_014335175.1_LK23",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2451386",
        "genome_size_ungapped": "2451386",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014335175.1-RS_2024_10_16",
        "annotation_date": "2024-10-16",
        "total_gene_count": "2166",
        "protein_coding_gene_count": "2079",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-31",
    "dateModified": "2020-08-31",
    "datePublished": "2020-08-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium amycolatum"
        ],
        "sample_taxid": [
            "43765"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.697 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2451386",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "570379",
        "N50 (bp)": "516623",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.7",
        "Number of CDSs": "2169",
        "Average Protein Length": "332.8",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium amycolatum",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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            },
            {
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                "species_taxid": 134034,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium freneyi",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium xerosis",
                "strain": "strain=NBRC 16721",
                "accession": "GCA_001552415.1",
                "taxid": 1725,
                "species_taxid": 1725,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1668,
                "matched_fragments": 257,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium sputi",
                "strain": "strain=DSM 45148",
                "accession": "GCA_000427865.1",
                "taxid": 489915,
                "species_taxid": 489915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9654,
                "matched_fragments": 150,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia insulae",
                "strain": "strain=MMS17-SY073",
                "accession": "GCA_003855095.1",
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                "species_taxid": 2420509,
                "relation_to_type": "type",
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                "ani": 76.165,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia bovistercoris",
                "strain": "strain=NEAU-351",
                "accession": "GCA_015674855.1",
                "taxid": 2785916,
                "species_taxid": 2785916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9458,
                "matched_fragments": 60,
                "total_fragments": 813,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_016889425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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            },
            {
                "accession": "GCF_000173655.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.32",
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                "num_clustered_genomes": 42,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}