{ "type": "genome", "identifier": "GCF_014352875.1", "organism": "Polaribacter pectinis", "title": "Polaribacter pectinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014352875.1", "bioproject": "PRJNA224116", "biosample": "SAMN14996743", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2738844", "species_taxid": "2738844", "organism_name": "Polaribacter pectinis", "infraspecific_name": "strain=L12M9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/01", "asm_name": "ASM1435287v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_014352875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/352/875/GCF_014352875.1_ASM1435287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3471153", "genome_size_ungapped": "3471153", "gc_percent": "29.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014352875.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "3084", "protein_coding_gene_count": "3030", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-01", "dateModified": "2020-09-01", "datePublished": "2020-09-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter pectinis" ], "sample_taxid": [ "2738844" ], "sample_host_organism": [ "scallop" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.938 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3471153", "Number of Sequences": "1", "Longest Sequences (bp)": "3471153", "N50 (bp)": "3471153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.7", "Number of CDSs": "3036", "Average Protein Length": "349.1", "Coding Ratio (%)": "91.6", "Number of rRNAs": "6", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1156, "total_fragments": 1157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 88.1171, "matched_fragments": 828, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 88.0603, "matched_fragments": 844, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 83.9428, "matched_fragments": 754, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 82.9785, "matched_fragments": 730, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 82.7515, "matched_fragments": 738, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 81.8269, "matched_fragments": 706, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 81.7722, "matched_fragments": 709, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 81.634, "matched_fragments": 691, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 81.508, "matched_fragments": 679, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014784055.1", "gtdb_species": "s__Polaribacter haliotis", "ani": 88.0431, "matched_fragments": 845, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017569185.1", "gtdb_species": "s__Polaribacter sp017569185", "ani": 83.9438, "matched_fragments": 752, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005885675.1", "gtdb_species": "s__Polaribacter aestuariivivens", "ani": 82.9569, "matched_fragments": 732, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017498485.1", "gtdb_species": "s__Polaribacter sp017498485", "ani": 82.7358, "matched_fragments": 739, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"ani": 81.5467, "matched_fragments": 706, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000687935.1", "gtdb_species": "s__Polaribacter sp000687935", "ani": 81.372, "matched_fragments": 713, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.351, "cell_length": 0.169, "doubling_h": null, "growth_tmp": 9.75, "optimum_tmp": 20.437, "optimum_ph": 7.25, "genome_size": 4097747.844, "gc_content": 31.525, "coding_genes": 3329.75, "rRNA16S_genes": 3.0, "tRNA_genes": 41.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Polaribacter", "pectinis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }