{ "type": "genome", "identifier": "GCF_014353015.1", "organism": "Chitinimonas koreensis", "title": "Chitinimonas koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014353015.1", "bioproject": "PRJNA224116", "biosample": "SAMN15893681", "wgs_master": "na", "refseq_category": "na", "taxid": "356302", "species_taxid": "356302", "organism_name": "Chitinimonas koreensis", "infraspecific_name": "strain=R2A43-10", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/01", "asm_name": "ASM1435301v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_014353015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/353/015/GCF_014353015.1_ASM1435301v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5648696", "genome_size_ungapped": "5648696", "gc_percent": "69.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014353015.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4982", "protein_coding_gene_count": "4715", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-01", "dateModified": "2020-09-01", "datePublished": "2020-09-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinimonas koreensis" ], "sample_taxid": [ "356302" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Sangju Province" ], "sample_host_location_id": [], "data_size": "1.497 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5648696", "Number of Sequences": "1", "Longest Sequences (bp)": "5648696", "N50 (bp)": "5648696", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "4935", "Average Protein Length": "331.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "12", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 99.93, "matched_fragments": 1838, "total_fragments": 1882, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinimonas taiwanensis", "strain": "strain=DSM 18899", "accession": "GCA_900119825.1", "taxid": 240412, "species_taxid": 240412, "relation_to_type": "type", "validated": true, "ani": 80.4395, "matched_fragments": 777, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas arctica", "strain": "strain=R3-44", "accession": "GCA_007431345.1", "taxid": 2594795, "species_taxid": 2594795, "relation_to_type": "type", "validated": true, "ani": 79.44, "matched_fragments": 722, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter luteus", "strain": "strain=DSM 27258", "accession": "GCA_004345725.1", "taxid": 1452487, "species_taxid": 1452487, "relation_to_type": "type", "validated": true, "ani": 79.3625, "matched_fragments": 584, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitiniphilus shinanonensis", "strain": "strain=DSM 23277", "accession": "GCA_000374805.1", "taxid": 553088, "species_taxid": 553088, "relation_to_type": "type", "validated": true, "ani": 79.0572, "matched_fragments": 679, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 79.0363, "matched_fragments": 528, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter intestini", "strain": "strain=GY 70310", "accession": "GCA_004919095.1", "taxid": 2563443, "species_taxid": 2563443, "relation_to_type": "type", "validated": true, "ani": 78.8786, "matched_fragments": 505, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia chitinilytica", "strain": "strain=KCTC 23701", "accession": "GCA_014652315.1", "taxid": 1041641, "species_taxid": 1041641, "relation_to_type": "type", "validated": true, "ani": 78.4891, "matched_fragments": 517, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia naejangsanensis", "strain": "strain=DSM 24253", "accession": "GCA_016865585.1", "taxid": 613195, "species_taxid": 613195, "relation_to_type": "type", "validated": true, "ani": 78.4372, "matched_fragments": 479, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Andreprevotia lacus", "strain": "strain=DSM 23236", "accession": "GCA_900176275.1", "taxid": 1121000, "species_taxid": 1121000, "relation_to_type": "type", "validated": true, "ani": 77.917, "matched_fragments": 444, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 77.7261, "matched_fragments": 508, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 77.1737, "matched_fragments": 439, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 77.11, "matched_fragments": 537, "total_fragments": 1882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, 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