{ "type": "genome", "identifier": "GCF_014384705.1", "organism": "Yeguia hominis", "title": "Yeguia hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014384705.1", "bioproject": "PRJNA224116", "biosample": "SAMN15783660", "wgs_master": "JACRSN000000000.1", "refseq_category": "reference genome", "taxid": "2763662", "species_taxid": "2763662", "organism_name": "Yeguia hominis", "infraspecific_name": "strain=NSJ-40", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/01", "asm_name": "ASM1438470v1", "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)", "gbrs_paired_asm": "GCA_014384705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/384/705/GCF_014384705.1_ASM1438470v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2977335", "genome_size_ungapped": "2977335", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014384705.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "2846", "protein_coding_gene_count": "2695", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-01", "dateModified": "2020-09-01", "datePublished": "2020-09-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Yeguia hominis" ], "sample_taxid": [ "2763662" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.839 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2977335", "Number of Sequences": "74", "Longest Sequences (bp)": "300397", "N50 (bp)": "145706", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.1", "Number of CDSs": "2772", "Average Protein Length": "298.6", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yeguia hominis", "strain": "strain=NSJ-40", "accession": "GCA_014384705.1", "taxid": 2763662, "species_taxid": 2763662, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 955, "total_fragments": 960, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caproiciproducens galactitolivorans", "strain": "strain=BS-1", "accession": "GCA_004768785.1", "taxid": 642589, "species_taxid": 642589, "relation_to_type": "type", "validated": true, "ani": 81.7627, "matched_fragments": 52, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_014384705.1", "gtdb_species": "s__NSJ-40 sp014384705", "ani": 100.0, "matched_fragments": 955, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__NSJ-40", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002159845.1", "gtdb_species": "s__Anaeromassilibacillus stercoravium", "ani": 80.6333, "matched_fragments": 56, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Anaeromassilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_018712265.1", "gtdb_species": "s__Gallacutalibacter pullicola", "ani": 76.6342, "matched_fragments": 58, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Gallacutalibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_015667585.1", "gtdb_species": "s__Anaeromassilibacillus sp015667585", "ani": 76.2286, "matched_fragments": 59, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Anaeromassilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Yeguia", "hominis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }